| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120598276
Identifier: 120598276
GI number: 120598276
Start: 1639334
End: 1639732
Strand: Direct
Name: 120598276
Synonym: Sputw3181_1453
Alternate gene names: NA
Gene position: 1639334-1639732 (Clockwise)
Preceding gene: 120598275
Following gene: 120598279
Centisome position: 34.82
GC content: 45.61
Gene sequence:
>399_bases ATGGGCGATGAATTTTTGATCGCGGCGTTAGTCTATGTGATTGCGTGCTTAGGGCTTGTGCTCTATCTACAAAAGCAGTT GAGTAAATTACGTAATAAAGTTGAAGCGTTAACTGTGCTTGTCAAGGAAGGTGACCGCCAGCGTGAAGCCTTTAAAAGGG AATTGCAGGAATTACGCAGCGGCACTATTGGCGTGGGGCGCAGAGTCATTGAGTTAGAAAAGCGGTTGCATCAGCAATCC GAGCGCATTGAAGAAACGACCTTACAAGATCCTCAAGCAAAGCTTTACACTCGTGCGATGAAAATGGTCGGACTTGGTGC GGGAGTCGATGAACTGATAAAAGAGTGTGAACTTCCCAAAGCTGAAGCTGAATTATTGATCCGGTTACATCGTAAATAG
Upstream 100 bases:
>100_bases AGGGGAACAATGCTTCCCAATAAAGCGATTAGAGTCATGAATCATGCATCCTCTTTATCCGTTATTCTGATTTATACATA GAAATGCATAAGGATTTTTA
Downstream 100 bases:
>100_bases CGAAGTGTAGGGGCTAAGACGCTCTCCCTTTTGCATCACCGCACTTTTTGTCATTTCTGCATCCTTCGTCATTCTCGCAT CCTTCGTCATTCCCGCGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MGDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRSGTIGVGRRVIELEKRLHQQS ERIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPKAEAELLIRLHRK
Sequences:
>Translated_132_residues MGDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRSGTIGVGRRVIELEKRLHQQS ERIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPKAEAELLIRLHRK >Mature_131_residues GDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRSGTIGVGRRVIELEKRLHQQSE RIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPKAEAELLIRLHRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15084; Mature: 14953
Theoretical pI: Translated: 9.17; Mature: 9.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC GTIGVGRRVIELEKRLHQQSERIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPK CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCH AEAELLIRLHRK HHHHHHHHHHCC >Mature Secondary Structure GDEFLIAALVYVIACLGLVLYLQKQLSKLRNKVEALTVLVKEGDRQREAFKRELQELRS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC GTIGVGRRVIELEKRLHQQSERIEETTLQDPQAKLYTRAMKMVGLGAGVDELIKECELPK CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCH AEAELLIRLHRK HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA