| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is flgK [H]
Identifier: 120598238
GI number: 120598238
Start: 1601362
End: 1603287
Strand: Direct
Name: flgK [H]
Synonym: Sputw3181_1415
Alternate gene names: 120598238
Gene position: 1601362-1603287 (Clockwise)
Preceding gene: 120598237
Following gene: 120598239
Centisome position: 34.01
GC content: 45.12
Gene sequence:
>1926_bases ATGGCGATTGACCTATTAAATATTGCACGTACTGGTGTGCTTGCCTCTCAATCGCAGCTAGGGGTTACCAGTAATAACAT TGCTAATGCGAATACCGCAGGCTATCACAGACAAGTGGCAACTCAGTCAACGCTGGAGTCGCAACGCTTTGGTAATAGTT TTTATGGTACAGGGACTTACGTTGATGACGTAAAGCGTATCTACAATGATTATGCGGCAAGAGAATTACGCATTGGGCAA ACAACCTTAAGTGGCGCAGAAGCAAGCTACGGCAAACTCAGTGAGCTCGATCAACTGTTTTCTCAAATCGGTAAAATGGT GCCGCAGAGCTTAAATTCTCTCTTTGCTGGAGTAAACAGTTTAGCGGATTTACCTGCTGATTTAGGTCTTCGCAGCTCAA CCCTGACTGATGCTAAACAAGTGGCAAGTAGCTTGAATCAGATGCAATCGAGTCTAAATGGCCAGCTTACGCAAACCAAT GACCAGATCACGGGGATGACTAAGCGCATCAACGAGATTAGTAAGGAGCTGGCTAATTTAAATCTCGAGCTGATGAAATC GCCAAATCAAGATGCCATGTTACTCGATAAGCAAGATGCACTCATTCAAGAGCTAAGCCAATATGCTCAGGTGAATGTAA TTCCTCAAGAGAATGGTGCAAAAAGTATTATGTTAGGTGGTTCGGTGATGTTGGTTTCCGGTGAAATCGCCATGACGATG GATACTAAAACTGGAGATCCATTTCCCAATGAATTGCAATTGACGTCAAGTATTGGCTCACAAAGTGTTGCTGCCGATCC GAGCAAGTTAGGTGGGCAATTAGGGGCGTTGTTTGAGTACCGTGATCAAACGTTAATTCCTGCAAGCCATGAGCTTGATC AGTTGGCCCTGGGGATTGCTGATAACTTCAACAAAATGCAGCAACAAGGATTAGATCTAAATGGCCAAGTGGGAGCGAAT ATCTTTAGGGATATTAATGATCCTTTGATGTCATTGGGTCGTGTTGGTGGCTATTCAAACAATACTGGTAACGCAACCTT AGGCGTGAATATTGATGACACAAGCTTATTAACGGGTGGCTCATATGAGTTATCTTTTACTGCGCCGGCCTCCTATGAAC TAAGGGATACAGAAACAGGGGTAATTACACCACTGACGTTAAATGGGTCGACCTTAGAAGGTGGTGCTGGATTTTCAATC GATATTAAAGCAGGGGCGATGGCTTCAGGTGATCGCTTTATTATTCGACCTACTGCGGGCGCCGCTAACGGCATTACCGT TGAAATGACGGATCCTAAAGGCATTGCTGCGGCTTCGCCTAAAATAACACCAGATACCGCGAACTCGGGTAATACCCAAG TTAAAGTGACGCAAATTACTAATCGTAGTGCCGCCAACTTTCCCGTTACTGGCAGTGAATTGACTATTCAGCTCGATACT ACGGCTGCGCCTCCAACCTATGAAGCATTCGATGCGTCAGGAAGCTCTCTTGGCGCCGCCGCTCCTTATACACCACCAAG TATTAGTGCCTTTGGTTTTACCTTTGAAGTTGATAGCACTGCAGCCGCTAGCAATGACAGATTTACCTTCGATTTATCCT TCGCCGAGGGTGATAACTCTAATGCTGTCGCTATGGCTAAGTTGAGCGAAAGTAAAGTGATGAATGGGGGGAAGTCAACC TTAGCGGATGTATTTGAAAATACAAAAATTGACATAGGCAGTAAGACAAAAGCGGCCGAAGTGCGTGTAGGGTCTGCAGA GGCTATTTACCAACAAGCCTATGCCAGAGTAGAAAGCGAATCGGGCGTCAACTTAGATGAAGAAGCCGCCAATTTAATGC GTTTTCAACAGGCTTATCAAGCCTCTGCTCGTATCATGACTACGGCACAACAAATTTTTGACACCCTATTAACTTCAGTG CGTTAG
Upstream 100 bases:
>100_bases AAAGTGATGCAGACCATAAGCCAAGAGCTTAAGTCGATACTGCCAGGAGAAGACAAATGATAAATCTTCATAGGATATTC GTTCTGAGGAGTGTCGGCTA
Downstream 100 bases:
>100_bases GAGATTTAATCATGCGACTATCATCCGCGCAGATCTTTAATCAAAGCATTACGAGTGTACTGCAAAAGCAAACGGCAACT AGCAAGATCCTCGAACAGCT
Product: flagellar hook-associated protein FlgK
Products: NA
Alternate protein names: HAP1 [H]
Number of amino acids: Translated: 641; Mature: 640
Protein sequence:
>641_residues MAIDLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDDVKRIYNDYAARELRIGQ TTLSGAEASYGKLSELDQLFSQIGKMVPQSLNSLFAGVNSLADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTN DQITGMTKRINEISKELANLNLELMKSPNQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAMTM DTKTGDPFPNELQLTSSIGSQSVAADPSKLGGQLGALFEYRDQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGAN IFRDINDPLMSLGRVGGYSNNTGNATLGVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSI DIKAGAMASGDRFIIRPTAGAANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQITNRSAANFPVTGSELTIQLDT TAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDSTAAASNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNGGKST LADVFENTKIDIGSKTKAAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLTSV R
Sequences:
>Translated_641_residues MAIDLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDDVKRIYNDYAARELRIGQ TTLSGAEASYGKLSELDQLFSQIGKMVPQSLNSLFAGVNSLADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTN DQITGMTKRINEISKELANLNLELMKSPNQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAMTM DTKTGDPFPNELQLTSSIGSQSVAADPSKLGGQLGALFEYRDQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGAN IFRDINDPLMSLGRVGGYSNNTGNATLGVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSI DIKAGAMASGDRFIIRPTAGAANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQITNRSAANFPVTGSELTIQLDT TAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDSTAAASNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNGGKST LADVFENTKIDIGSKTKAAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLTSV R >Mature_640_residues AIDLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTYVDDVKRIYNDYAARELRIGQT TLSGAEASYGKLSELDQLFSQIGKMVPQSLNSLFAGVNSLADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTND QITGMTKRINEISKELANLNLELMKSPNQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAMTMD TKTGDPFPNELQLTSSIGSQSVAADPSKLGGQLGALFEYRDQTLIPASHELDQLALGIADNFNKMQQQGLDLNGQVGANI FRDINDPLMSLGRVGGYSNNTGNATLGVNIDDTSLLTGGSYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSID IKAGAMASGDRFIIRPTAGAANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQITNRSAANFPVTGSELTIQLDTT AAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDSTAAASNDRFTFDLSFAEGDNSNAVAMAKLSESKVMNGGKSTL ADVFENTKIDIGSKTKAAEVRVGSAEAIYQQAYARVESESGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLTSVR
Specific function: Unknown
COG id: COG1256
COG function: function code N; Flagellar hook-associated protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the flagella basal body rod proteins family [H]
Homologues:
Organism=Escherichia coli, GI1787323, Length=458, Percent_Identity=27.9475982532751, Blast_Score=147, Evalue=2e-36,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010930 - InterPro: IPR001444 - InterPro: IPR002371 [H]
Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]
EC number: NA
Molecular weight: Translated: 67715; Mature: 67584
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTY CEEEEHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH VDDVKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQIGKMVPQSLNSLFAGVNS HHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANL HHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCC NLELMKSPNQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAMTM CEEEECCCCCCCEEECHHHHHHHHHHHHHEEEEEECCCCCCEEEECCEEEEEECCEEEEE DTKTGDPFPNELQLTSSIGSQSVAADPSKLGGQLGALFEYRDQTLIPASHELDQLALGIA ECCCCCCCCCCEEEEHHCCCCCCCCCHHHHCHHHHHHHHHCCCEECCCCCCHHHHHHHHH DNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNNTGNATLGVNIDDTSLLTGG HHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECC SYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAMASGDRFIIRPTAG CEEEEEECCCCEEECCCCCCEEEEEEECCCEECCCCCEEEEEECCCCCCCCEEEEEECCC AANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQITNRSAANFPVTGSELTIQLDT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEC TAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDSTAAASNDRFTFDLSFAEGDNS CCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCC NAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTKAAEVRVGSAEAIYQQAYARVESE CEEEEEECCHHHHCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHCCC SGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLTSVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AIDLLNIARTGVLASQSQLGVTSNNIANANTAGYHRQVATQSTLESQRFGNSFYGTGTY EEEEHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCH VDDVKRIYNDYAARELRIGQTTLSGAEASYGKLSELDQLFSQIGKMVPQSLNSLFAGVNS HHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADLPADLGLRSSTLTDAKQVASSLNQMQSSLNGQLTQTNDQITGMTKRINEISKELANL HHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCC NLELMKSPNQDAMLLDKQDALIQELSQYAQVNVIPQENGAKSIMLGGSVMLVSGEIAMTM CEEEECCCCCCCEEECHHHHHHHHHHHHHEEEEEECCCCCCEEEECCEEEEEECCEEEEE DTKTGDPFPNELQLTSSIGSQSVAADPSKLGGQLGALFEYRDQTLIPASHELDQLALGIA ECCCCCCCCCCEEEEHHCCCCCCCCCHHHHCHHHHHHHHHCCCEECCCCCCHHHHHHHHH DNFNKMQQQGLDLNGQVGANIFRDINDPLMSLGRVGGYSNNTGNATLGVNIDDTSLLTGG HHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEECC SYELSFTAPASYELRDTETGVITPLTLNGSTLEGGAGFSIDIKAGAMASGDRFIIRPTAG CEEEEEECCCCEEECCCCCCEEEEEEECCCEECCCCCEEEEEECCCCCCCCEEEEEECCC AANGITVEMTDPKGIAAASPKITPDTANSGNTQVKVTQITNRSAANFPVTGSELTIQLDT CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEC TAAPPTYEAFDASGSSLGAAAPYTPPSISAFGFTFEVDSTAAASNDRFTFDLSFAEGDNS CCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCC NAVAMAKLSESKVMNGGKSTLADVFENTKIDIGSKTKAAEVRVGSAEAIYQQAYARVESE CEEEEEECCHHHHCCCCHHHHHHHHCCCEEECCCCCCEEEEECCCHHHHHHHHHHHHCCC SGVNLDEEAANLMRFQQAYQASARIMTTAQQIFDTLLTSVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 8158647 [H]