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The map label for this gene is yhjC [H]

Identifier: 120598066

GI number: 120598066

Start: 1405736

End: 1406635

Strand: Direct

Name: yhjC [H]

Synonym: Sputw3181_1243

Alternate gene names: 120598066

Gene position: 1405736-1406635 (Clockwise)

Preceding gene: 120598063

Following gene: 120598069

Centisome position: 29.86

GC content: 43.33

Gene sequence:

>900_bases
ATGAGTGATGATTTGGGCAGTGAATTACAACTTCTTTATCTTTTTGTGCACTTAGTGAATGCGGGAAGTTTTTCACAGGC
GGCCAAAGAGTTGGATATGCCTATTGCGACCGTGAGTCGTAAGTTAGCCAAATTAGAAGAAAAGCTCGATAAGCAACTCT
TTATGCGTAGCACTCGTAAACTGAGGTTGACTGAAGAAGGCTTAGCCTTATTTCAGCGTTATCAGAGTGTCATAGCCCAG
TTTGATGAGCTTAGTGGCGTGGGAAGTGATAAACCCGAAGGGACGTTAAGAATTGCCGCGCCGATTTCTATTATCTCTAT
CATTTTTATCCGAGCTCTTAATGAGTTTGGTCGTTTGTATCCCGATATTCGCCTGCATATATCCCAGAGTAATGAGTTGG
TTGATTTGATCGACAAAGGGATTGATGTGGCGATTGTGGGTGGCGCTCAGCCTGATTCTTCATGGGTGTCGAGTACATTA
GGTGAGTTAGATTACTGTTTATTTGCTACGCCAGAATATTTAGCACAGGCACCTAAGTTGACCCACCCGAATGATTTAGA
AGCGCATCAGCTTATTAAAGTCTGGCCCTTATTTAATTGGCATTTAAAGCATCCGAACGGTGAGTCCTTCTACTTTAATG
GTCCAACCAAGCTCACATTGACGGATTTACACGGTGCTATTGAGTCGGCATTGGATCATGGTGGCATTTTGTACGGTCCT
GAATTGTTTGTAAAACAGCAGATTAAAGAGGACCGACTCAAAGTATTATTACCTGAATGGGTGGGTGAGCAGCGACGGAT
TTCAATCTTGTATCATCAACGCAGCCAACAACCGCTAAAGGTGAGAGTGTTTATTGAGTTTATGCAGTCGAAGGCGCCAG
AATTGTTTTCCATGGCTTGA

Upstream 100 bases:

>100_bases
TGACTGAATATCGGCTTTTGAGTTGATGTACCATGGACAGTTTGAATTACAATTCGTTAACTATGTAGACCTAAGTAGCC
TATAAAAATTGGGATGTGAT

Downstream 100 bases:

>100_bases
GTTGCCTTTGATATTGAGCATTTGCATCGCTCAAGGTATTGTTTAATGAAAATTATCAGCGATTTGACTTTGTAGGTCTA
TGGTTTGTTTATGCCTATAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSDDLGSELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLTHPNDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIESALDHGGILYGP
ELFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMA

Sequences:

>Translated_299_residues
MSDDLGSELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYCLFATPEYLAQAPKLTHPNDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIESALDHGGILYGP
ELFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMA
>Mature_298_residues
SDDLGSELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQF
DELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLG
ELDYCLFATPEYLAQAPKLTHPNDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIESALDHGGILYGPE
LFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=29.4117647058824, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.681660899654, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=28.9752650176678, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=28.5223367697594, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=28.4280936454849, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=26.2626262626263, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=261, Percent_Identity=28.3524904214559, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=23.8095238095238, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=27.9527559055118, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=30.3225806451613, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787806, Length=145, Percent_Identity=29.6551724137931, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789173, Length=281, Percent_Identity=24.1992882562278, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33813; Mature: 33682

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDLGSELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVIAQFDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
THPNDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIESALDHGGILYGP
CCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCEEEEHHHHHHHHHHHHCCCEEECH
ELFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMA
HHHHHHHHHHHHHHEECHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
SDDLGSELQLLYLFVHLVNAGSFSQAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRLTEEGLALFQRYQSVIAQFDELSGVGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYCLFATPEYLAQAPKL
CCEEEEECCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHEECCHHHHHCCCCC
THPNDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIESALDHGGILYGP
CCCCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCEEEEHHHHHHHHHHHHCCCEEECH
ELFVKQQIKEDRLKVLLPEWVGEQRRISILYHQRSQQPLKVRVFIEFMQSKAPELFSMA
HHHHHHHHHHHHHHEECHHHCCCCCEEEEEEECCCCCCEEHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]