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The map label for this gene is nusB

Identifier: 120598061

GI number: 120598061

Start: 1400510

End: 1400914

Strand: Direct

Name: nusB

Synonym: Sputw3181_1238

Alternate gene names: 120598061

Gene position: 1400510-1400914 (Clockwise)

Preceding gene: 120598060

Following gene: 120598062

Centisome position: 29.75

GC content: 49.38

Gene sequence:

>405_bases
ATGAAGCCTTCTGAGCGCCGCAAGGCCCGCCGTTTAGCCGTTCAAGCCATCTATTCATGGCAACTAAGCGGGAATAATAT
TGCCGATGTCGAGCATGAGTTTTTAACTGAGCAGAGTCTCGACGGTGTTGATGTAGCTTATTTTCGTGAGCTATTTTCAG
GCGTTGCAACGAAGAAACCCCAGTTGGATGAGCTGATCATCCCGCATCTGGAGCGCCCGATCGATGAAGTGTCTCCTGTT
GAGAAAGCCATAGTACGTTTAGCGACCTATGAGCTGACTTTCCGTAAAGATGTGCCCTACAAGGTCGCGATTAACGAGGC
GATTGAGTTGGCAAAAGCTTTCGGTGCGGACGAGAGTCATAAGTTTGTGAACGGACTGCTCGACAAACTGGTTGCACGCA
AGTAA

Upstream 100 bases:

>100_bases
CCAAAGCGGGTAATAAAGGCGGCGAAGCTGCTTTAAGCCTGCTTGAAATGGTCAATGTTCTGCAAGAACTTGAACAACAG
TTGTAATAGTAGGAAAAATA

Downstream 100 bases:

>100_bases
TAAAGACAAACGGTATCTTAGGATACCGTTTTTCATTGCTAACAAAGGTGGCCGATGTAAGTCGTGCCAAACTGTACAGT
GAAAGAATTCCAATTAATTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKPQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Sequences:

>Translated_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKPQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK
>Mature_134_residues
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKPQLDELIIPHLERPIDEVSPV
EKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESHKFVNGLLDKLVARK

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=129, Percent_Identity=65.8914728682171, Blast_Score=167, Evalue=2e-43,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15223; Mature: 15223

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
QLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESH
CHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKPSERRKARRLAVQAIYSWQLSGNNIADVEHEFLTEQSLDGVDVAYFRELFSGVATKKP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
QLDELIIPHLERPIDEVSPVEKAIVRLATYELTFRKDVPYKVAINEAIELAKAFGADESH
CHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHEECCCCCEEHHHHHHHHHHHHHCCCCHH
KFVNGLLDKLVARK
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA