| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597822
Identifier: 120597822
GI number: 120597822
Start: 1131613
End: 1132731
Strand: Direct
Name: 120597822
Synonym: Sputw3181_0992
Alternate gene names: NA
Gene position: 1131613-1132731 (Clockwise)
Preceding gene: 120597821
Following gene: 120597823
Centisome position: 24.03
GC content: 50.31
Gene sequence:
>1119_bases ATGGCAACCACCTACCATTTAAGCGATATCCTTCATCAGCACTTAGCCCACTACCAACAGCAGCATAAACTGACCGAACA GCAAGCCTTAGTCTGCCAGCATATTCAGCAGTGTCGCACGCAAACCTTAGGCATACAGCAATGGCGTTGTGATACTTGCC AATATGAGCAGCAGGTATTTTGCTCCTGTGGTGACCGGCATTGTCCTCGTTGCCAGGGAAGGCAGACACAAGCATGGATT GCTGCGCAACAGGCGCAAGTCTTGCCTTGTCGCTATTTCCATTTGGTCTTTACCTTACCCCACGAGTTGAACATCTTGGC GCACTACGCTGCCAAGCCGCTATACAGCGCCCTGTTTGAGTCGGTGTGGCAGACGCTTGCGCAGTTTGGTATGAAGCGAA AACACCTTCAGGGTCAATTGGGTTGCACTATGGTGCTGCACACGTGGGGGCAAACCTTGAGTCAGCATATTCACTTGCAT TGCTTAATCCCGGGTGGGGTGCTGACGTCAGCGGGAGATTGGCATAGCGTGAAAACGGATTATCTGTTTCCGGTGAAAGC CTTGTCCACCGTGTATCGGGCCAAGTTATTACGGGTGCTTCGACAACATGAGCTGGCTATCCCTGCGGCTGACACCTTAA TGGCAAAACCGTGGTGTGTTTACAGCAAAGCGTGTCTGAGCCGCGCTGAAACCGTGGTGGAATATCTCGGGCGTTATACC CGTAAAGGCATGCTGCATGAATCAAGAATTGCCGACGTCACCGCAGAGCATGTCAGTTTTTACTACAAGGACTATCGTGA CGGTCAGCAGCATAAGCAAATGCGGCTAAGCTGTGATGAGTTTATCCGCCGTTACTTATTACATGTGTTGCCCAAAGGGC TGATGCGAGTGAGACACTTTGGTTTTCTCGCCAACGCTTGCCGCCGTAAAAAGCTCGCGCTTATCCAGCCGCAATTACGT AAGCCGCAGGTGGTATTGGTGAGTCCTTTAGTTAAGGAGGACTGTTTGTGGTCATGTCCGCAATGCCAGTTAGGTCATTT ACAGTTTATTGGGCTGATAAGACAGCAGGGATTAGTGATGATTAACAACCAAAGTCAGCCAATATGCCTGTCAGGATAA
Upstream 100 bases:
>100_bases TTGGTCATCACAGTATTAAGTCCACCGAGCGCTACTTGCATTGGTCGCCGGAATTGGGTCATCAAGGGTGTGACTTGCTA GCAAGTCTTGGGGGGATGCA
Downstream 100 bases:
>100_bases CCCCTCCCTCAAGACGTAGCGTAACCGACAGCGAAAAGCAGCCAGTCTTATGGGGTAAGCCAGTGAGGGGATAGGGTGTG AGTGTCAGCCTGAATGCGGG
Product: putative transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MATTYHLSDILHQHLAHYQQQHKLTEQQALVCQHIQQCRTQTLGIQQWRCDTCQYEQQVFCSCGDRHCPRCQGRQTQAWI AAQQAQVLPCRYFHLVFTLPHELNILAHYAAKPLYSALFESVWQTLAQFGMKRKHLQGQLGCTMVLHTWGQTLSQHIHLH CLIPGGVLTSAGDWHSVKTDYLFPVKALSTVYRAKLLRVLRQHELAIPAADTLMAKPWCVYSKACLSRAETVVEYLGRYT RKGMLHESRIADVTAEHVSFYYKDYRDGQQHKQMRLSCDEFIRRYLLHVLPKGLMRVRHFGFLANACRRKKLALIQPQLR KPQVVLVSPLVKEDCLWSCPQCQLGHLQFIGLIRQQGLVMINNQSQPICLSG
Sequences:
>Translated_372_residues MATTYHLSDILHQHLAHYQQQHKLTEQQALVCQHIQQCRTQTLGIQQWRCDTCQYEQQVFCSCGDRHCPRCQGRQTQAWI AAQQAQVLPCRYFHLVFTLPHELNILAHYAAKPLYSALFESVWQTLAQFGMKRKHLQGQLGCTMVLHTWGQTLSQHIHLH CLIPGGVLTSAGDWHSVKTDYLFPVKALSTVYRAKLLRVLRQHELAIPAADTLMAKPWCVYSKACLSRAETVVEYLGRYT RKGMLHESRIADVTAEHVSFYYKDYRDGQQHKQMRLSCDEFIRRYLLHVLPKGLMRVRHFGFLANACRRKKLALIQPQLR KPQVVLVSPLVKEDCLWSCPQCQLGHLQFIGLIRQQGLVMINNQSQPICLSG >Mature_371_residues ATTYHLSDILHQHLAHYQQQHKLTEQQALVCQHIQQCRTQTLGIQQWRCDTCQYEQQVFCSCGDRHCPRCQGRQTQAWIA AQQAQVLPCRYFHLVFTLPHELNILAHYAAKPLYSALFESVWQTLAQFGMKRKHLQGQLGCTMVLHTWGQTLSQHIHLHC LIPGGVLTSAGDWHSVKTDYLFPVKALSTVYRAKLLRVLRQHELAIPAADTLMAKPWCVYSKACLSRAETVVEYLGRYTR KGMLHESRIADVTAEHVSFYYKDYRDGQQHKQMRLSCDEFIRRYLLHVLPKGLMRVRHFGFLANACRRKKLALIQPQLRK PQVVLVSPLVKEDCLWSCPQCQLGHLQFIGLIRQQGLVMINNQSQPICLSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 32 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007069 [H]
Pfam domain/function: PF04986 Transposase_32 [H]
EC number: NA
Molecular weight: Translated: 42978; Mature: 42847
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 5.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATTYHLSDILHQHLAHYQQQHKLTEQQALVCQHIQQCRTQTLGIQQWRCDTCQYEQQVF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH CSCGDRHCPRCQGRQTQAWIAAQQAQVLPCRYFHLVFTLPHELNILAHYAAKPLYSALFE HHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH SVWQTLAQFGMKRKHLQGQLGCTMVLHTWGQTLSQHIHLHCLIPGGVLTSAGDWHSVKTD HHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCC YLFPVKALSTVYRAKLLRVLRQHELAIPAADTLMAKPWCVYSKACLSRAETVVEYLGRYT CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RKGMLHESRIADVTAEHVSFYYKDYRDGQQHKQMRLSCDEFIRRYLLHVLPKGLMRVRHF HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GFLANACRRKKLALIQPQLRKPQVVLVSPLVKEDCLWSCPQCQLGHLQFIGLIRQQGLVM HHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEE INNQSQPICLSG ECCCCCCEECCC >Mature Secondary Structure ATTYHLSDILHQHLAHYQQQHKLTEQQALVCQHIQQCRTQTLGIQQWRCDTCQYEQQVF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHH CSCGDRHCPRCQGRQTQAWIAAQQAQVLPCRYFHLVFTLPHELNILAHYAAKPLYSALFE HHCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH SVWQTLAQFGMKRKHLQGQLGCTMVLHTWGQTLSQHIHLHCLIPGGVLTSAGDWHSVKTD HHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCC YLFPVKALSTVYRAKLLRVLRQHELAIPAADTLMAKPWCVYSKACLSRAETVVEYLGRYT CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RKGMLHESRIADVTAEHVSFYYKDYRDGQQHKQMRLSCDEFIRRYLLHVLPKGLMRVRHF HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GFLANACRRKKLALIQPQLRKPQVVLVSPLVKEDCLWSCPQCQLGHLQFIGLIRQQGLVM HHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHCCEEE INNQSQPICLSG ECCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]