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The map label for this gene is xerD [C]

Identifier: 120597821

GI number: 120597821

Start: 1130771

End: 1131634

Strand: Direct

Name: xerD [C]

Synonym: Sputw3181_0991

Alternate gene names: 120597821

Gene position: 1130771-1131634 (Clockwise)

Preceding gene: 120597820

Following gene: 120597822

Centisome position: 24.02

GC content: 48.84

Gene sequence:

>864_bases
ATGTCATCACTTCTGCAACAATTCCATGATGAGATTAGTTTACGTGGTTACTCGGCCCGTACGCGTAACGCTTATTTGTA
TGCCATCACCCAACTGCAGCAGTATGCCAACCAACCGCTCGATAACATTACGGATGAGCAGCTTACGGCTTATTTCCGTT
ACTTAAATCTTGAGCGGCATCATTCCAGAGCCACCTTAAAGTTACAGCTTAATGGCATTCATTTTTTCTATGAACATGTC
CTAAAACGTGACTTTACGATTCAGCTAAGTTTACCTAAACGTCCGCACAAACTGCCGCAATTGCTGAGTTGCCAAGATAT
CGCGGCACTGCTGTACCACTGTCAAAGCCTGAAACAACGCGCCATGTTGGCGCTGTGTTATGGTTGTGGTTTACGCGTCA
GTGAGTTAACCCATATTAAGGTTGCTGATATCGATGGGCAGCGGCAGTTGCTCAAAGTGTGTCAAGGCAAGGGGGCCTGC
GACCGCTGGGTGATTATTTCACCGACCTTACTCACCCTGTTGCGTCAGTATTGGCAAGCGTATCATCCCGTCGAATGGTT
GTTTGCCTCGACCTATCATGATGTGGTTTATCCGCTGCATGAGTCGACCTTTCGTAAAGCCTTAGCGAAGGCGGCTCGCT
TAGCGGGTATCACTAAGCCGTGCAGCCCACACAGCCTAAGGCATGCTTATGCGACCCATCAATTACAAGCGGGTATGCCC
CTTCATCAATTACAGGCCCAACTTGGTCATCACAGTATTAAGTCCACCGAGCGCTACTTGCATTGGTCGCCGGAATTGGG
TCATCAAGGGTGTGACTTGCTAGCAAGTCTTGGGGGGATGCAATGGCAACCACCTACCATTTAA

Upstream 100 bases:

>100_bases
GCACTAATAAAATGTTGAACTAAGCCGCTGCGCGGAGCCTAAAACGATCCACTGCTCCACACTTACTCCTAGGGATAATC
CCTCACCTAGGAGGTCTACC

Downstream 100 bases:

>100_bases
GCGATATCCTTCATCAGCACTTAGCCCACTACCAACAGCAGCATAAACTGACCGAACAGCAAGCCTTAGTCTGCCAGCAT
ATTCAGCAGTGTCGCACGCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHV
LKRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAC
DRWVIISPTLLTLLRQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQLQAGMP
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMQWQPPTI

Sequences:

>Translated_287_residues
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHV
LKRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAC
DRWVIISPTLLTLLRQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQLQAGMP
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMQWQPPTI
>Mature_286_residues
SSLLQQFHDEISLRGYSARTRNAYLYAITQLQQYANQPLDNITDEQLTAYFRYLNLERHHSRATLKLQLNGIHFFYEHVL
KRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACD
RWVIISPTLLTLLRQYWQAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQLQAGMPL
HQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMQWQPPTI

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=204, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790244, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 32999; Mature: 32867

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLQQFHDEISLRGYSARTRNAYLYAITQLQQYANQPLDNITDEQLTAYFRYLNLERH
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQSLKQR
CCCEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLLRQYWQA
HHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHH
YHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQLQAGMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMQWQPPTI
HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SSLLQQFHDEISLRGYSARTRNAYLYAITQLQQYANQPLDNITDEQLTAYFRYLNLERH
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HSRATLKLQLNGIHFFYEHVLKRDFTIQLSLPKRPHKLPQLLSCQDIAALLYHCQSLKQR
CCCEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLLRQYWQA
HHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHH
YHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQLQAGMP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC
LHQLQAQLGHHSIKSTERYLHWSPELGHQGCDLLASLGGMQWQPPTI
HHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]