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The map label for this gene is yeaM [H]

Identifier: 120597756

GI number: 120597756

Start: 1051695

End: 1052537

Strand: Direct

Name: yeaM [H]

Synonym: Sputw3181_0926

Alternate gene names: 120597756

Gene position: 1051695-1052537 (Clockwise)

Preceding gene: 120597754

Following gene: 120597757

Centisome position: 22.34

GC content: 42.82

Gene sequence:

>843_bases
ATGCTAAGTCGCCAACTCGATTCGATTAACGCCATTATTGAGCAAGCGCCTAATATGCCTTCATTTGTAAAAACGATTGA
GATGCAAAAGGGGTATGTGGATGTTTTACACCAGCACTGTTGGCATCAGCTTATTTTTCCGCTTCAAGGCCTGTTACAGA
CAGAGGCAAATGGGGCACTGTTTTTAGTTCCCCATACCACAGCGCTTTTTGTGCCAGCAGGAGTGGTACATGAGTCTGTT
GCGATTGCTCATACCTGCTTTATTGGCGTCTATCTGAATCCTATGTATGGTCGAGATTATGGCGCCACGATTAAACCTGT
CGCTATGAGTGCTTTTCTAAGGGAGTTAGTGTTAACGCTCAGAAAACAATGTGCATTAAATACCTCAATGAACATTGAGC
CAATGACACCGGCGCCAATATTACGTTTGCTTGAGGTGTTATACGATCAAATTAATAGTGCGGGAGGGCAGACTTTTAAG
TTACTGATACCGCAAGATAGGCGCCTAAAATTGATTTTTGAGCACTTAACTCAAATGCCAGCTTTAGATTTCTCTTTAGT
AAAATGGGGGGAGATGGTTGGAGCATCGGAACGAACATTGTCGAGGTTATTTGTGAGGGAGTTTGGTTGTTCATTTGTAT
TATGGCGTCAACATTTACGGCTGATCTATTCGCTATCACTATTGGCCACTGACCTATCAATACAGAATGTGGCCCACCAA
ATTGGTTATCAAAATGATTCATCCTATATCAAAGCCTTCAAGGAGCGTTTTGGGATGACGCCACAGCGATTTCGGTTAGG
TGATCATGGGATAACGACTCATGGTAACGAGCACTCTATTTAA

Upstream 100 bases:

>100_bases
ATGCAATGAATATGCATTGAGTGTTCCTGTGTCTTTTGTGGGATAACGCTATGCTACAATTCTTTTATTTGGCTGAATAA
CGTCATATGGACAAGTAATA

Downstream 100 bases:

>100_bases
ATGGCTTCTCTAATATCGAATCAATGTGTTCCCTCTTTTTGCTGCACAGATATTCATTGGGCCGAATAAAAATCAAGCGA
GTGTTAATTGCAAGCATGCT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEANGALFLVPHTTALFVPAGVVHESV
AIAHTCFIGVYLNPMYGRDYGATIKPVAMSAFLRELVLTLRKQCALNTSMNIEPMTPAPILRLLEVLYDQINSAGGQTFK
LLIPQDRRLKLIFEHLTQMPALDFSLVKWGEMVGASERTLSRLFVREFGCSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGITTHGNEHSI

Sequences:

>Translated_280_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEANGALFLVPHTTALFVPAGVVHESV
AIAHTCFIGVYLNPMYGRDYGATIKPVAMSAFLRELVLTLRKQCALNTSMNIEPMTPAPILRLLEVLYDQINSAGGQTFK
LLIPQDRRLKLIFEHLTQMPALDFSLVKWGEMVGASERTLSRLFVREFGCSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGITTHGNEHSI
>Mature_280_residues
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEANGALFLVPHTTALFVPAGVVHESV
AIAHTCFIGVYLNPMYGRDYGATIKPVAMSAFLRELVLTLRKQCALNTSMNIEPMTPAPILRLLEVLYDQINSAGGQTFK
LLIPQDRRLKLIFEHLTQMPALDFSLVKWGEMVGASERTLSRLFVREFGCSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGITTHGNEHSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=231, Percent_Identity=33.7662337662338, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31693; Mature: 31693

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEANGAL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLVPHTTALFVPAGVVHESVAIAHTCFIGVYLNPMYGRDYGATIKPVAMSAFLRELVLTL
EEEECCHHHHHCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RKQCALNTSMNIEPMTPAPILRLLEVLYDQINSAGGQTFKLLIPQDRRLKLIFEHLTQMP
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
ALDFSLVKWGEMVGASERTLSRLFVREFGCSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGITTHGNEHSI
HCCCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLSRQLDSINAIIEQAPNMPSFVKTIEMQKGYVDVLHQHCWHQLIFPLQGLLQTEANGAL
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
FLVPHTTALFVPAGVVHESVAIAHTCFIGVYLNPMYGRDYGATIKPVAMSAFLRELVLTL
EEEECCHHHHHCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RKQCALNTSMNIEPMTPAPILRLLEVLYDQINSAGGQTFKLLIPQDRRLKLIFEHLTQMP
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
ALDFSLVKWGEMVGASERTLSRLFVREFGCSFVLWRQHLRLIYSLSLLATDLSIQNVAHQ
CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGYQNDSSYIKAFKERFGMTPQRFRLGDHGITTHGNEHSI
HCCCCCHHHHHHHHHHHCCCHHHEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]