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The map label for this gene is cmpR [H]

Identifier: 120597691

GI number: 120597691

Start: 971761

End: 972831

Strand: Direct

Name: cmpR [H]

Synonym: Sputw3181_0861

Alternate gene names: 120597691

Gene position: 971761-972831 (Clockwise)

Preceding gene: 120597689

Following gene: 120597692

Centisome position: 20.64

GC content: 44.63

Gene sequence:

>1071_bases
ATGGCTGGTGATTTTGAACCTAATTGGTTATATTGGAAAATAAATTGTTTACCACTTAGGTATAGAACATTATCTATGGA
AAAGCATTCGTCATTGACCCCATTTAAATTGCGGCACTTAAGTTTTCGTTTATTGCAGGTCTATGTGCAGGTTGTTCGGC
TTGGCAATATTTCCGCAGCAGCAAGGGTTTTACATTTAACTCAGCCGACAGTGTCATTGCAACTTAAGAAACTGGCCGAT
GTGTTGGGCGAGCCATTACTGGAGAGCCGTGATGGCCGCATGTTGCCTACTTTGATAGGTAATGAACTTTATCGCGCCGC
CTGCGATACCTTAAGTCGTTTTGAGGATGTTGAAGCCTTTATGCAGCAGGCTAAAGGTGGCAGCGTTGGTCATATCAATA
TTGGCATAGTCACCACTGCAAAATACGTATTACCACGGATTTTAGGTGCATTTTATCGGCAATTTCCACAGGTTAAAGTG
ACCTTAAATATTGGTAATCGTGCCCATGTGTTAGGCCGATTTGAACGCCAAGAAGATGATTTATATCTGTTTAGCCATCC
ACCAAGTGGTGATAATGTGTTATCCGCGCGCATCATTAAAAACCCACTGCAATTGATTGTGCCTAAAGATCACTGGGCGG
TGGGCCGCGAGCAAGTGAATTTTAATGAGCTTAAACATGAGCGTTTTATCGTGCGCGAACCAGGCTCAGCCACGCGCTTG
ATGTTTGAGTCTTGGTGTAGTGCTCAAGGCATAACCCTAAGCGATACGATGCAAATTGAGAGCAATGAAGCCATCCGTTT
GAGCGTTGCGTCGGGTTTAGGATTATCCGTCATATCAGCACACACACTGCAAGAAGGGCGTGAAAAACCAGCGGTTTTGC
CTGTTATTGGTTTTCCTCTTGAAAGTAATTGGTATCTGGTTGGTCGTAAAGATCGCCGCTTACCCTATGCGGCCATGCAG
TTAGTGGATTTTATGGCAGCGCACTTGGCCGAATGTATTGAACCAGAGTGGGTTGCTACGGATATCCAGCAGCTTAGCAT
GCATTTTAATCCTGCAAGTCTATCTAGGTAG

Upstream 100 bases:

>100_bases
AACCTAAAGCGAAGAAAGCAATCACAATATCGGGCATAAGTATCTCATTAGTTTTGACTTTTACACCCTGCTATACAGGG
TGAGTGGTCGAGTGATCCTG

Downstream 100 bases:

>100_bases
GGGGAATCTAGCTGAACTTTTTTTAGTGATAGCAAGATTTAATAGGACTTTCATCTTGATAGGATGATGAAATATGAATA
ATTGGGTTTTACTGAATCTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MAGDFEPNWLYWKINCLPLRYRTLSMEKHSSLTPFKLRHLSFRLLQVYVQVVRLGNISAAARVLHLTQPTVSLQLKKLAD
VLGEPLLESRDGRMLPTLIGNELYRAACDTLSRFEDVEAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKV
TLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQLIVPKDHWAVGREQVNFNELKHERFIVREPGSATRL
MFESWCSAQGITLSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREKPAVLPVIGFPLESNWYLVGRKDRRLPYAAMQ
LVDFMAAHLAECIEPEWVATDIQQLSMHFNPASLSR

Sequences:

>Translated_356_residues
MAGDFEPNWLYWKINCLPLRYRTLSMEKHSSLTPFKLRHLSFRLLQVYVQVVRLGNISAAARVLHLTQPTVSLQLKKLAD
VLGEPLLESRDGRMLPTLIGNELYRAACDTLSRFEDVEAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKV
TLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQLIVPKDHWAVGREQVNFNELKHERFIVREPGSATRL
MFESWCSAQGITLSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREKPAVLPVIGFPLESNWYLVGRKDRRLPYAAMQ
LVDFMAAHLAECIEPEWVATDIQQLSMHFNPASLSR
>Mature_355_residues
AGDFEPNWLYWKINCLPLRYRTLSMEKHSSLTPFKLRHLSFRLLQVYVQVVRLGNISAAARVLHLTQPTVSLQLKKLADV
LGEPLLESRDGRMLPTLIGNELYRAACDTLSRFEDVEAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVT
LNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQLIVPKDHWAVGREQVNFNELKHERFIVREPGSATRLM
FESWCSAQGITLSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREKPAVLPVIGFPLESNWYLVGRKDRRLPYAAMQL
VDFMAAHLAECIEPEWVATDIQQLSMHFNPASLSR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=260, Percent_Identity=25.3846153846154, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=24.7148288973384, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=27.1604938271605, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=24.8, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=24.2307692307692, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=281, Percent_Identity=22.4199288256228, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=23.463687150838, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=23.7113402061856, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=23.2, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 40241; Mature: 40110

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGDFEPNWLYWKINCLPLRYRTLSMEKHSSLTPFKLRHLSFRLLQVYVQVVRLGNISAA
CCCCCCCCEEEEEEEEEEEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
ARVLHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYRAACDTLSRFEDVEAF
HHEEEECCCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDD
HHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCC
LYLFSHPPSGDNVLSARIIKNPLQLIVPKDHWAVGREQVNFNELKHERFIVREPGSATRL
EEEEECCCCCCCEEEHHHHCCCCEEEECCCCHHCCCCCCCHHHHCCCEEEEECCCCHHHH
MFESWCSAQGITLSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREKPAVLPVIGFPL
HHHHHCCCCCCEEECEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
ESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVATDIQQLSMHFNPASLSR
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC
>Mature Secondary Structure 
AGDFEPNWLYWKINCLPLRYRTLSMEKHSSLTPFKLRHLSFRLLQVYVQVVRLGNISAA
CCCCCCCEEEEEEEEEEEEEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
ARVLHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYRAACDTLSRFEDVEAF
HHEEEECCCCHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDD
HHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCC
LYLFSHPPSGDNVLSARIIKNPLQLIVPKDHWAVGREQVNFNELKHERFIVREPGSATRL
EEEEECCCCCCCEEEHHHHCCCCEEEECCCCHHCCCCCCCHHHHCCCEEEEECCCCHHHH
MFESWCSAQGITLSDTMQIESNEAIRLSVASGLGLSVISAHTLQEGREKPAVLPVIGFPL
HHHHHCCCCCCEEECEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
ESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVATDIQQLSMHFNPASLSR
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]