| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is yhhW [C]
Identifier: 120597663
GI number: 120597663
Start: 935514
End: 936401
Strand: Direct
Name: yhhW [C]
Synonym: Sputw3181_0833
Alternate gene names: 120597663
Gene position: 935514-936401 (Clockwise)
Preceding gene: 120597662
Following gene: 120597664
Centisome position: 19.87
GC content: 49.44
Gene sequence:
>888_bases ATGAAAGTATTAAGTCAGTTTTCCGCCAAAGCCGCGATGGATGGCGATGGGGTCAATATTCGCCGTGTCGCCGATTTTGT GACGACTAAATTTGATCCTTTCTTGATGATCGACGAAATAAAATCCGATGATGAACAAGATTTTATTGGCGGCTTCCCCG CACATCCCCATCGCGGGATGGAGACCTTCACTTATATTCGTAAGGGCGGTTTTGAGCATCGCGACCAAATGGGTAATGTG AAGGCGATTCGTGCCGGCGATGTGCAGTGGATGAGCACCGGGTTCGGAGTAGTACACTCTGAAATGCCGCTGGCCGATGC AGTTGATGGTCTGCATGGATTCCAAATTTGGGTCAATATGCCCGCCAAAGACAAGCTGCGCCCTGCGAAGTATCAAGATA CTGCGGGTAGCGCGAGCGTTGAAGCGACCAATGATACTGGCGCAACCTTGAAAGCCTTAGCGGGTGATTGGGGCTTTAAA GATCAGCCGCTTATTAGTGCGGCTATTCAAGGATTAGCGGGTGAGGCTGCTATTGCTGATTTAAGTCTATCGCCAAATGC TGAGGCCACGCTCGATTTGTCTCAACATGAGTTTGTCGCCTTGTACCTTTACCAAGGTGGCTTATATAAAAGCGATTCGA GTAAGGGTGAGGATTCACACTGGTCATCTGCTTCAAATCAACATCATCAGGGCGAGTTTTTAGTGCTCGATAGCCAAAGT GTGCTTAAGCTTAAAGCCGATGAGCGCGGCGCTGGGATGTTACTATTTGCGGGTAAACCTATCCGTGAAAAAATCGTCCA GATGGGGCCCTTTGTGATGAACACCCAAGCGGAAATTCAGCAGGCGATCCGCGATTATCAAGAAGGGCGTTTCGGCCAGA TCGCGTAA
Upstream 100 bases:
>100_bases TTGTTATTCTGCCTCCATCAGCAAAGCGTTTGCGTCTTGTGTTAGCCGTATGATCTTGGCGTTTCACGTATCGCTTTGCT CAACCGATAGGAGAGCAGCA
Downstream 100 bases:
>100_bases TTTGTTAAATCTGCCGTGCTGAGCTAATTCTAAATCCAAGCCTAAATTTAAGTTTAAGCCCTGTATTCCTACAGGGCTTT TTGTTGCTGTTCACGCAAGC
Product: pirin domain-containing protein
Products: NA
Alternate protein names: Putative quercetinase; Pirin-like protein VC_A0969 [H]
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MKVLSQFSAKAAMDGDGVNIRRVADFVTTKFDPFLMIDEIKSDDEQDFIGGFPAHPHRGMETFTYIRKGGFEHRDQMGNV KAIRAGDVQWMSTGFGVVHSEMPLADAVDGLHGFQIWVNMPAKDKLRPAKYQDTAGSASVEATNDTGATLKALAGDWGFK DQPLISAAIQGLAGEAAIADLSLSPNAEATLDLSQHEFVALYLYQGGLYKSDSSKGEDSHWSSASNQHHQGEFLVLDSQS VLKLKADERGAGMLLFAGKPIREKIVQMGPFVMNTQAEIQQAIRDYQEGRFGQIA
Sequences:
>Translated_295_residues MKVLSQFSAKAAMDGDGVNIRRVADFVTTKFDPFLMIDEIKSDDEQDFIGGFPAHPHRGMETFTYIRKGGFEHRDQMGNV KAIRAGDVQWMSTGFGVVHSEMPLADAVDGLHGFQIWVNMPAKDKLRPAKYQDTAGSASVEATNDTGATLKALAGDWGFK DQPLISAAIQGLAGEAAIADLSLSPNAEATLDLSQHEFVALYLYQGGLYKSDSSKGEDSHWSSASNQHHQGEFLVLDSQS VLKLKADERGAGMLLFAGKPIREKIVQMGPFVMNTQAEIQQAIRDYQEGRFGQIA >Mature_295_residues MKVLSQFSAKAAMDGDGVNIRRVADFVTTKFDPFLMIDEIKSDDEQDFIGGFPAHPHRGMETFTYIRKGGFEHRDQMGNV KAIRAGDVQWMSTGFGVVHSEMPLADAVDGLHGFQIWVNMPAKDKLRPAKYQDTAGSASVEATNDTGATLKALAGDWGFK DQPLISAAIQGLAGEAAIADLSLSPNAEATLDLSQHEFVALYLYQGGLYKSDSSKGEDSHWSSASNQHHQGEFLVLDSQS VLKLKADERGAGMLLFAGKPIREKIVQMGPFVMNTQAEIQQAIRDYQEGRFGQIA
Specific function: Putative quercetin 2,3-dioxygenase [H]
COG id: COG1741
COG function: function code R; Pirin-related protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pirin family [H]
Homologues:
Organism=Homo sapiens, GI66363697, Length=296, Percent_Identity=30.4054054054054, Blast_Score=141, Evalue=6e-34, Organism=Homo sapiens, GI4505823, Length=296, Percent_Identity=30.4054054054054, Blast_Score=141, Evalue=6e-34, Organism=Escherichia coli, GI1789847, Length=105, Percent_Identity=38.0952380952381, Blast_Score=72, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR012093 - InterPro: IPR008778 - InterPro: IPR003829 - InterPro: IPR014710 [H]
Pfam domain/function: PF02678 Pirin; PF05726 Pirin_C [H]
EC number: =1.13.11.24 [H]
Molecular weight: Translated: 32202; Mature: 32202
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVLSQFSAKAAMDGDGVNIRRVADFVTTKFDPFLMIDEIKSDDEQDFIGGFPAHPHRGM CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCCCCCCCCCCH ETFTYIRKGGFEHRDQMGNVKAIRAGDVQWMSTGFGVVHSEMPLADAVDGLHGFQIWVNM HHHHHHHHCCCCHHHHCCCEEEEECCCEEEEECCCCEEECCCCHHHHHCCCCEEEEEEEC PAKDKLRPAKYQDTAGSASVEATNDTGATLKALAGDWGFKDQPLISAAIQGLAGEAAIAD CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEE LSLSPNAEATLDLSQHEFVALYLYQGGLYKSDSSKGEDSHWSSASNQHHQGEFLVLDSQS EECCCCCCEEEEECCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCC VLKLKADERGAGMLLFAGKPIREKIVQMGPFVMNTQAEIQQAIRDYQEGRFGQIA EEEEECCCCCCEEEEECCCCHHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKVLSQFSAKAAMDGDGVNIRRVADFVTTKFDPFLMIDEIKSDDEQDFIGGFPAHPHRGM CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHCCCCCCCCCCCH ETFTYIRKGGFEHRDQMGNVKAIRAGDVQWMSTGFGVVHSEMPLADAVDGLHGFQIWVNM HHHHHHHHCCCCHHHHCCCEEEEECCCEEEEECCCCEEECCCCHHHHHCCCCEEEEEEEC PAKDKLRPAKYQDTAGSASVEATNDTGATLKALAGDWGFKDQPLISAAIQGLAGEAAIAD CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEE LSLSPNAEATLDLSQHEFVALYLYQGGLYKSDSSKGEDSHWSSASNQHHQGEFLVLDSQS EECCCCCCEEEEECCCCEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCC VLKLKADERGAGMLLFAGKPIREKIVQMGPFVMNTQAEIQQAIRDYQEGRFGQIA EEEEECCCCCCEEEEECCCCHHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]