| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597655
Identifier: 120597655
GI number: 120597655
Start: 928523
End: 928933
Strand: Direct
Name: 120597655
Synonym: Sputw3181_0824
Alternate gene names: NA
Gene position: 928523-928933 (Clockwise)
Preceding gene: 120597654
Following gene: 120597658
Centisome position: 19.72
GC content: 45.5
Gene sequence:
>411_bases ATGACTGAAGAATTCCTTTTAGAAGGTGGTTGCCTGTGTGGGGCGATTCGTTATCGGCTCGATGGTGAACCCTTTGATGC GGATTATTGCCACTGCCGTATGTGTCAAAAGAGTACGGGGTCAGTGTTTGGCGCTTGGATGGATTTTAAGTTTGCTCAAG TCACTTGGCTTAATGGTGTGGTGACTGAATTTGCATCATCTGAGTTTGTTAGGCGCGGTTTTTGTAAGGAGTGTGGTTGC TCGCTGACCTATCGGCATACCCAATACCCTGATTATGTCACCTTAACAATAGCGAGCTTAGATGATCCTAATCGCATCAG GCCACATTACCATATTTATACTGAGAGTCAGGTCAGTTGGTTGACTATTGAGGATAACTGTAAAAGGTATCCCCAAGGTC GAAGCGCCTAA
Upstream 100 bases:
>100_bases GCTAATCCACAATTGTCGATTTATGGCATTACGGCACGTAATGCGAGCAAACTAGCAGAGAGACTCGCGGCAAAACTCAG TGTAGGGGACAAGGTTTAGT
Downstream 100 bases:
>100_bases GCTCTGTGAGGTAATGGCTTTATCTAGGCGTATAAATTTAAGGTGTGAGTAGCGCTAACTGTTTTACATCGGCTTCGCCT AACCCGAATAAACTTAGGTA
Product: glutathione-dependent formaldehyde-activating, GFA
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Protein; Glutathione-Dependent Formaldehyde-Activating; Glutathione-Dependent Formaldehyde-Activating Family; Glutathione-Dependent Formaldehyde-Activating Gfa; Glutathione-Dependent Formaldehyde-Activating Protein GFA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MTEEFLLEGGCLCGAIRYRLDGEPFDADYCHCRMCQKSTGSVFGAWMDFKFAQVTWLNGVVTEFASSEFVRRGFCKECGC SLTYRHTQYPDYVTLTIASLDDPNRIRPHYHIYTESQVSWLTIEDNCKRYPQGRSA
Sequences:
>Translated_136_residues MTEEFLLEGGCLCGAIRYRLDGEPFDADYCHCRMCQKSTGSVFGAWMDFKFAQVTWLNGVVTEFASSEFVRRGFCKECGC SLTYRHTQYPDYVTLTIASLDDPNRIRPHYHIYTESQVSWLTIEDNCKRYPQGRSA >Mature_135_residues TEEFLLEGGCLCGAIRYRLDGEPFDADYCHCRMCQKSTGSVFGAWMDFKFAQVTWLNGVVTEFASSEFVRRGFCKECGCS LTYRHTQYPDYVTLTIASLDDPNRIRPHYHIYTESQVSWLTIEDNCKRYPQGRSA
Specific function: Unknown
COG id: COG3791
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15697; Mature: 15566
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 8.8 %Cys+Met (Translated Protein) 6.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEEFLLEGGCLCGAIRYRLDGEPFDADYCHCRMCQKSTGSVFGAWMDFKFAQVTWLNGV CCCHHEECCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEEEHHHHH VTEFASSEFVRRGFCKECGCSLTYRHTQYPDYVTLTIASLDDPNRIRPHYHIYTESQVSW HHHHHHHHHHHHCCHHHHCCCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCEEE LTIEDNCKRYPQGRSA EEECCCCCCCCCCCCC >Mature Secondary Structure TEEFLLEGGCLCGAIRYRLDGEPFDADYCHCRMCQKSTGSVFGAWMDFKFAQVTWLNGV CCHHEECCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCEEEEEEHHHHH VTEFASSEFVRRGFCKECGCSLTYRHTQYPDYVTLTIASLDDPNRIRPHYHIYTESQVSW HHHHHHHHHHHHCCHHHHCCCEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEECCCEEE LTIEDNCKRYPQGRSA EEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA