| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is bla [H]
Identifier: 120597617
GI number: 120597617
Start: 878634
End: 879446
Strand: Direct
Name: bla [H]
Synonym: Sputw3181_0786
Alternate gene names: 120597617
Gene position: 878634-879446 (Clockwise)
Preceding gene: 120597606
Following gene: 120597619
Centisome position: 18.66
GC content: 44.53
Gene sequence:
>813_bases ATGCGTTTGTTCGTCATCTCGGCGGTATTGGTGATGTCCTCCATCTCAGCTTCCCCTGTTTTTGCTGCTAGCTCGCCCCA AAAAGAGTGGCAAGAAACCCGCAGTTTGGATGCCAGTTTTACTCAGCACCAAGCTAAAGGCGTGGTGGTGTTATGGAATG AAAATAAACAACAGGGATTCACTAATAATCTTAAACGCGCCAATCAAGGTTTTTTACCTGCATCGACGTTTAAAATTCCC AACAGTTTGATTGCTCTCGATTTAGGGATGGTGAAAGATGAGCACCAAGTTTTTAAGTGGGATGGTAAAAATCGTGATAT TGCCGCCTGGAATCGTGACCATAATTTGATTAGCGCCATGAAGTATTCGGTTGTGCCCATCTACCAAGAGTTTGCTCGCC AAATAGGTGATGCTCGCATGGGGAAGATGATCGCTGTTTTTGATTATGGCAATGAGGATATCTCAGGCAATTTAGACAGT TTTTGGTTAGATGGAGGCATTCGGATCTCAGCCAAAGAGCAAATCGATTTCCTACGTCGGCTTTATCATAACAAGTTGCA TGTTTCCGAGAGAAGTCAGCGTATTGTTAAGCAAGCCATGCTGACTGAAGCCAATAGTGACTATATTATCCGCGCAAAAA CGGGTTATGCCGTAAGGGCCGAACCGAGCATTGGTTGGTGGGTCGGTTGGGTAGAACTCGATGATAATGTATGGTTTTTT GCAATGAATATGGATATGCCATCAGCGGATGGTTTGGCACTGCGCCAAGCCATTACAAAAGAAGTACTCAGGCAGGAAAA GATTATCCCCTAA
Upstream 100 bases:
>100_bases ACAATTGGTCAGCAGTTTGCTAGGGCATGCTGTAGTGCTAAGTGATAGCCTTAATCACTTTTTTAGTTTGTTGGATTGTT TGTTTTTTCAAGGAGATTTT
Downstream 100 bases:
>100_bases TCAACTGTGTTATGGGTGACAGATGAAAACAAAAAGCCTAGTGGGATAATCTAGGCTTTTTGTTATTAATGGGTAAACCC TTAGCCCATTAACGATTGCA
Product: Beta-lactamase
Products: NA
Alternate protein names: Beta-lactamase PSE-2 [H]
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSLDASFTQHQAKGVVVLWNENKQQGFTNNLKRANQGFLPASTFKIP NSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAMKYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDS FWLDGGIRISAKEQIDFLRRLYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF AMNMDMPSADGLALRQAITKEVLRQEKIIP
Sequences:
>Translated_270_residues MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSLDASFTQHQAKGVVVLWNENKQQGFTNNLKRANQGFLPASTFKIP NSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAMKYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDS FWLDGGIRISAKEQIDFLRRLYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF AMNMDMPSADGLALRQAITKEVLRQEKIIP >Mature_270_residues MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSLDASFTQHQAKGVVVLWNENKQQGFTNNLKRANQGFLPASTFKIP NSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAMKYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDS FWLDGGIRISAKEQIDFLRRLYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF AMNMDMPSADGLALRQAITKEVLRQEKIIP
Specific function: Hydrolyzes both carbenicillin and oxacillin [H]
COG id: COG2602
COG function: function code V; Beta-lactamase class D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-D beta-lactamase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR002137 - InterPro: IPR001460 [H]
Pfam domain/function: PF00905 Transpeptidase [H]
EC number: =3.5.2.6 [H]
Molecular weight: Translated: 30759; Mature: 30759
Theoretical pI: Translated: 9.25; Mature: 9.25
Prosite motif: PS00337 BETA_LACTAMASE_D
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSLDASFTQHQAKGVVVLWNENKQQGF CEEHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCC TNNLKRANQGFLPASTFKIPNSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAM HHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCCCHHHHHH KYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDSFWLDGGIRISAKEQIDFLRR HHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCCCEEEECCCEEEEHHHHHHHHHH LYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF HHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEEECCCEEEE AMNMDMPSADGLALRQAITKEVLRQEKIIP EEECCCCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRLFVISAVLVMSSISASPVFAASSPQKEWQETRSLDASFTQHQAKGVVVLWNENKQQGF CEEHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHCCCCHHHHHCCCCEEEEECCCCCCCC TNNLKRANQGFLPASTFKIPNSLIALDLGMVKDEHQVFKWDGKNRDIAAWNRDHNLISAM HHHHHHHCCCCCCCHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCEEEECCCCHHHHHH KYSVVPIYQEFARQIGDARMGKMIAVFDYGNEDISGNLDSFWLDGGIRISAKEQIDFLRR HHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCCCEEEECCCEEEEHHHHHHHHHH LYHNKLHVSERSQRIVKQAMLTEANSDYIIRAKTGYAVRAEPSIGWWVGWVELDDNVWFF HHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEEECCCEEEE AMNMDMPSADGLALRQAITKEVLRQEKIIP EEECCCCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3126705; 11188693 [H]