| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597514
Identifier: 120597514
GI number: 120597514
Start: 757238
End: 758608
Strand: Direct
Name: 120597514
Synonym: Sputw3181_0683
Alternate gene names: NA
Gene position: 757238-758608 (Clockwise)
Preceding gene: 120597512
Following gene: 120597516
Centisome position: 16.08
GC content: 42.96
Gene sequence:
>1371_bases ATGATAAAAAGTAAATTAAAGGAATGGGTTGCTGTTACCGTGGCGTGTTTAGCCGTTACGGCATGTGGATCAGATGATAA GGATGAAGGGAGTTCTGAACAAAACACCACTTATGTGCAATTCTACAATGCTTCTGCTAGAAGTACCGCAACGGCGCTCA AAGTTGCCGACAAAACCTATGAAAGTGTGATCTATGGTGATGCGATGCCCCGTTTTACGTCGACAGTTGGAGTATCTGCA ATTGAGGTGATGGGGAAAGACGCCTCCAATAAAGAGATTTCTATTTACAAAGAGAATATTGAATTAAAAGCGGCAACGGA TCACTTCTTTGTATTACATGGTGATTTTGCCGAACCTAAATTACTTAATATCAACTATTCTCGCACTGAACTCGATAAGC TCAACGAAGTGGCTGAAAACAGTAAAATGCAGCTCTTGATTGCCAATACCGCTGTACATGCCCAAGCCTTTGACGCCTAT GTTGCTAAGTCGACCCAAACCTTTGCCGATGCCGTGATGTTAGGTAGTGTGGCTTATGGTGAAGTGTCGCAGCCGCAAAT GATGGATACAGGTGAATATAAGGTTTATCTCACACCCGCGGGAACAACCAATGTTGCTTATACAACGGCTAACATTAAAT TCAGTTCAAAGGTGCCCTATAAGTTGATTATCCGCGAAGGTTTTGGTGCTTCGGATGCCAAAATCACCTTAGACAGTGTC GATTCAACTACCAATGTTCGCAATCATGTGGCATTAGAAGCGAGTGTCGATTATCGCGTCTTTAACGGTTTAGGCTCGCA TATTATTGATGTGAAAGTCGCCAGCAGTAAGCAAGAAACCCTGTTTAGCGAAGTGCCATCTTTTGGGGTGACTAGCTATC AAGGTGCTGAGTTTAATGATTTTGGTGTGAGTGTGTTCGACCACGGTACGCAAACTAAATTACTCGATAATGTGCTTATC ACCCTTAACCAAGATGACATTAAAACCATCTTCATCTATGAGCAAACGAATGAGCAGGGCAGCCAAGTGAAGGCGATAGA GATGAAGCAAACTCAGACGCCAAATCCCTATAGCGTGAAGTTCGATATTGTGAGTTTTGCCGATAAAAGCAATCTAACCG TGTATTTTTTAAAGGCGAATGACACGATTGAAACGGCTGCAAATAAGATCACTGCGGTCAATCCAGCGAGCCCTCAGTCA TTGACTGTGCCTGCTGGCGAATATTCCATTAAGGTCATCGCCGTGGAAAACGGTACTAAAACCGTTGTCTATGCATCCGA CTTAATGGATTTCAGCAATGAAGACAATGTGACTATGGTGCTGAATAAAGATCCTTCTACCAGCTTTGGTTATAACCTCA TTAAGCTGTAA
Upstream 100 bases:
>100_bases TGTGAAAAAATTGTTCTTATTTTTATATCTATCAGCCATTGTTGTGGCGCTATATCTGCGTAGACTAAACCTGATTTTTC GTCAGTCTATGAGGGATATA
Downstream 100 bases:
>100_bases TTACTCACATAAGGTTATTAAGCAAATAAAAAAAGCGCTATCTAGGTCCTAGGTAGCGCTTTTTATTAATCCAGTGTTTA TATTACTCGGATAGCTTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MIKSKLKEWVAVTVACLAVTACGSDDKDEGSSEQNTTYVQFYNASARSTATALKVADKTYESVIYGDAMPRFTSTVGVSA IEVMGKDASNKEISIYKENIELKAATDHFFVLHGDFAEPKLLNINYSRTELDKLNEVAENSKMQLLIANTAVHAQAFDAY VAKSTQTFADAVMLGSVAYGEVSQPQMMDTGEYKVYLTPAGTTNVAYTTANIKFSSKVPYKLIIREGFGASDAKITLDSV DSTTNVRNHVALEASVDYRVFNGLGSHIIDVKVASSKQETLFSEVPSFGVTSYQGAEFNDFGVSVFDHGTQTKLLDNVLI TLNQDDIKTIFIYEQTNEQGSQVKAIEMKQTQTPNPYSVKFDIVSFADKSNLTVYFLKANDTIETAANKITAVNPASPQS LTVPAGEYSIKVIAVENGTKTVVYASDLMDFSNEDNVTMVLNKDPSTSFGYNLIKL
Sequences:
>Translated_456_residues MIKSKLKEWVAVTVACLAVTACGSDDKDEGSSEQNTTYVQFYNASARSTATALKVADKTYESVIYGDAMPRFTSTVGVSA IEVMGKDASNKEISIYKENIELKAATDHFFVLHGDFAEPKLLNINYSRTELDKLNEVAENSKMQLLIANTAVHAQAFDAY VAKSTQTFADAVMLGSVAYGEVSQPQMMDTGEYKVYLTPAGTTNVAYTTANIKFSSKVPYKLIIREGFGASDAKITLDSV DSTTNVRNHVALEASVDYRVFNGLGSHIIDVKVASSKQETLFSEVPSFGVTSYQGAEFNDFGVSVFDHGTQTKLLDNVLI TLNQDDIKTIFIYEQTNEQGSQVKAIEMKQTQTPNPYSVKFDIVSFADKSNLTVYFLKANDTIETAANKITAVNPASPQS LTVPAGEYSIKVIAVENGTKTVVYASDLMDFSNEDNVTMVLNKDPSTSFGYNLIKL >Mature_456_residues MIKSKLKEWVAVTVACLAVTACGSDDKDEGSSEQNTTYVQFYNASARSTATALKVADKTYESVIYGDAMPRFTSTVGVSA IEVMGKDASNKEISIYKENIELKAATDHFFVLHGDFAEPKLLNINYSRTELDKLNEVAENSKMQLLIANTAVHAQAFDAY VAKSTQTFADAVMLGSVAYGEVSQPQMMDTGEYKVYLTPAGTTNVAYTTANIKFSSKVPYKLIIREGFGASDAKITLDSV DSTTNVRNHVALEASVDYRVFNGLGSHIIDVKVASSKQETLFSEVPSFGVTSYQGAEFNDFGVSVFDHGTQTKLLDNVLI TLNQDDIKTIFIYEQTNEQGSQVKAIEMKQTQTPNPYSVKFDIVSFADKSNLTVYFLKANDTIETAANKITAVNPASPQS LTVPAGEYSIKVIAVENGTKTVVYASDLMDFSNEDNVTMVLNKDPSTSFGYNLIKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49783; Mature: 49783
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKSKLKEWVAVTVACLAVTACGSDDKDEGSSEQNTTYVQFYNASARSTATALKVADKTY CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHH ESVIYGDAMPRFTSTVGVSAIEVMGKDASNKEISIYKENIELKAATDHFFVLHGDFAEPK HHEEECCCCCCHHHHCCCEEEEEECCCCCCCEEEEEEECEEEEEECCEEEEEECCCCCCE LLNINYSRTELDKLNEVAENSKMQLLIANTAVHAQAFDAYVAKSTQTFADAVMLGSVAYG EEEEECCHHHHHHHHHHHCCCCEEEEEEECEEEHHHHHHHHHCCHHHHHHHHHCCCEECC EVSQPQMMDTGEYKVYLTPAGTTNVAYTTANIKFSSKVPYKLIIREGFGASDAKITLDSV CCCCCCEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECC DSTTNVRNHVALEASVDYRVFNGLGSHIIDVKVASSKQETLFSEVPSFGVTSYQGAEFND CCCCCCCCEEEEEEECCEEECCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCC FGVSVFDHGTQTKLLDNVLITLNQDDIKTIFIYEQTNEQGSQVKAIEMKQTQTPNPYSVK CCEEEECCCCHHHEECEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEE FDIVSFADKSNLTVYFLKANDTIETAANKITAVNPASPQSLTVPAGEYSIKVIAVENGTK EEEEEECCCCCCEEEEEECCCCHHHHCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCE TVVYASDLMDFSNEDNVTMVLNKDPSTSFGYNLIKL EEEEEEHHHCCCCCCCEEEEEECCCCCCCCEEEEEC >Mature Secondary Structure MIKSKLKEWVAVTVACLAVTACGSDDKDEGSSEQNTTYVQFYNASARSTATALKVADKTY CCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHH ESVIYGDAMPRFTSTVGVSAIEVMGKDASNKEISIYKENIELKAATDHFFVLHGDFAEPK HHEEECCCCCCHHHHCCCEEEEEECCCCCCCEEEEEEECEEEEEECCEEEEEECCCCCCE LLNINYSRTELDKLNEVAENSKMQLLIANTAVHAQAFDAYVAKSTQTFADAVMLGSVAYG EEEEECCHHHHHHHHHHHCCCCEEEEEEECEEEHHHHHHHHHCCHHHHHHHHHCCCEECC EVSQPQMMDTGEYKVYLTPAGTTNVAYTTANIKFSSKVPYKLIIREGFGASDAKITLDSV CCCCCCEECCCCEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEECC DSTTNVRNHVALEASVDYRVFNGLGSHIIDVKVASSKQETLFSEVPSFGVTSYQGAEFND CCCCCCCCEEEEEEECCEEECCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCC FGVSVFDHGTQTKLLDNVLITLNQDDIKTIFIYEQTNEQGSQVKAIEMKQTQTPNPYSVK CCEEEECCCCHHHEECEEEEEECCCCEEEEEEEEECCCCCCEEEEEEEECCCCCCCEEEE FDIVSFADKSNLTVYFLKANDTIETAANKITAVNPASPQSLTVPAGEYSIKVIAVENGTK EEEEEECCCCCCEEEEEECCCCHHHHCCEEEEECCCCCCEEEECCCCEEEEEEEEECCCE TVVYASDLMDFSNEDNVTMVLNKDPSTSFGYNLIKL EEEEEEHHHCCCCCCCEEEEEECCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA