| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
Click here to switch to the map view.
The map label for this gene is 120597507
Identifier: 120597507
GI number: 120597507
Start: 746899
End: 747636
Strand: Direct
Name: 120597507
Synonym: Sputw3181_0676
Alternate gene names: NA
Gene position: 746899-747636 (Clockwise)
Preceding gene: 120597506
Following gene: 120597508
Centisome position: 15.86
GC content: 49.46
Gene sequence:
>738_bases ATGAGTAGTCAACGAACTCTGACTGTATTATTTTTCTTATCTCTGTGTGGTTTTTTGTGTTTATCAAAACTGGCGCAGGC CAGTGATTATGTTAGTTGTTTAGCCGAAAAATTGCAGGGCATAACCCATGATGCCGCTGTAAAAGCGATCACTGAGGCAT GCCAAGCCCAATATGCTAGTAATACCGCATCCAAGGCTGCCAGCGCCCCAGCTAAAGCGCTTATTGATGGGCGCTATCGT GATAACGGCAATGGCACCATTACCGATACCAAAACCAACCTTATCTGGATGCGTTGCAGCCTTGGACAGCAATGGACAGG CAGTACCTGTGCCGGTGTGGCCATGGAGATGAACTGGAATGATGCGTTGAAAACCGCAATCAGTTTTAGCTATGCAGGCC ACAGCGACTGGCGGGTACCCACTGTCGATGAGTTAGATACTCTGGTGCAATGCTCGGCAGGTCGAGCACCCTCAGCACGC CCCAATGGTAAGTTTGTTGCTGATACTGATGGGAGTTGCCATGGCAATGAATTTAGCAATCCCAAAATTAATATTAATGC CTTTCCAAACACGCCTATAGTAGGTTTCTTCTGGTCATCTTCGCCCAATACCGACCACAGTGGCTACGCGTGGGGAGTTT ACTTCGACAGTGGTTATGTCGGTTTTAACAATGGTGGTGCATACGGCTCCAATCGGGGCGAGGGCCGCCACGTCCGTTTG GTGCGAGCCGGACAGTAA
Upstream 100 bases:
>100_bases CCGTTATACCCAAACGACTTGGCATTGCTGGTGGTAGATATTGCGGATTATTTCACCAGCTAAAAGGTAGCCAAAACCTA ATTAATAACAAGGATCGCTT
Downstream 100 bases:
>100_bases TTGGTTGTTGGCAGTGCGTCTTGGTAGCGCATTTTAGGGGCTAAAAAGGCTGAGTAGGTGCGGATGCTGCGAGTGAAACT AACAATACAGCTTGGATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MSSQRTLTVLFFLSLCGFLCLSKLAQASDYVSCLAEKLQGITHDAAVKAITEACQAQYASNTASKAASAPAKALIDGRYR DNGNGTITDTKTNLIWMRCSLGQQWTGSTCAGVAMEMNWNDALKTAISFSYAGHSDWRVPTVDELDTLVQCSAGRAPSAR PNGKFVADTDGSCHGNEFSNPKININAFPNTPIVGFFWSSSPNTDHSGYAWGVYFDSGYVGFNNGGAYGSNRGEGRHVRL VRAGQ
Sequences:
>Translated_245_residues MSSQRTLTVLFFLSLCGFLCLSKLAQASDYVSCLAEKLQGITHDAAVKAITEACQAQYASNTASKAASAPAKALIDGRYR DNGNGTITDTKTNLIWMRCSLGQQWTGSTCAGVAMEMNWNDALKTAISFSYAGHSDWRVPTVDELDTLVQCSAGRAPSAR PNGKFVADTDGSCHGNEFSNPKININAFPNTPIVGFFWSSSPNTDHSGYAWGVYFDSGYVGFNNGGAYGSNRGEGRHVRL VRAGQ >Mature_244_residues SSQRTLTVLFFLSLCGFLCLSKLAQASDYVSCLAEKLQGITHDAAVKAITEACQAQYASNTASKAASAPAKALIDGRYRD NGNGTITDTKTNLIWMRCSLGQQWTGSTCAGVAMEMNWNDALKTAISFSYAGHSDWRVPTVDELDTLVQCSAGRAPSARP NGKFVADTDGSCHGNEFSNPKININAFPNTPIVGFFWSSSPNTDHSGYAWGVYFDSGYVGFNNGGAYGSNRGEGRHVRLV RAGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26279; Mature: 26148
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQRTLTVLFFLSLCGFLCLSKLAQASDYVSCLAEKLQGITHDAAVKAITEACQAQYAS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NTASKAASAPAKALIDGRYRDNGNGTITDTKTNLIWMRCSLGQQWTGSTCAGVAMEMNWN CHHHHHHCCCHHHHCCCEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCH DALKTAISFSYAGHSDWRVPTVDELDTLVQCSAGRAPSARPNGKFVADTDGSCHGNEFSN HHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCC PKININAFPNTPIVGFFWSSSPNTDHSGYAWGVYFDSGYVGFNNGGAYGSNRGEGRHVRL CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEE VRAGQ EECCC >Mature Secondary Structure SSQRTLTVLFFLSLCGFLCLSKLAQASDYVSCLAEKLQGITHDAAVKAITEACQAQYAS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC NTASKAASAPAKALIDGRYRDNGNGTITDTKTNLIWMRCSLGQQWTGSTCAGVAMEMNWN CHHHHHHCCCHHHHCCCEEEECCCEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEECCH DALKTAISFSYAGHSDWRVPTVDELDTLVQCSAGRAPSARPNGKFVADTDGSCHGNEFSN HHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCC PKININAFPNTPIVGFFWSSSPNTDHSGYAWGVYFDSGYVGFNNGGAYGSNRGEGRHVRL CEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCEEEE VRAGQ EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA