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The map label for this gene is orn [H]

Identifier: 120597485

GI number: 120597485

Start: 719882

End: 720427

Strand: Direct

Name: orn [H]

Synonym: Sputw3181_0654

Alternate gene names: 120597485

Gene position: 719882-720427 (Clockwise)

Preceding gene: 120597479

Following gene: 120597486

Centisome position: 15.29

GC content: 43.22

Gene sequence:

>546_bases
ATGACGGCGAATGTAAATAATCTCATTTGGATCGATCTTGAAATGACGGGGCTAGAACCTGATGTCGACAGAATTATTGA
AATTGCCACTTTAGTGACGGATCAAGAACTCAATATTATTGGTCAGGGCCCCGTAATTGCTATCCATCAGCCAGATGAAG
TGCTTGCGGCAATGGATGATTGGAATCAAAAGCATCATGGTGAGTCTGGACTGATTGATCGCGTTCGAGCGAGCCAAGAT
AATGAAGCGCAAGCTGTGGCAAAGACCATTGCATTTTTAGAGCAATATGTGCCTAAGGGCGCTTCACCTATGTGTGGCAA
TAGCGTTGGTCAAGACCGACGTTTCCTCAATCGCTATATGCGCGAACTGGAGGATTATTTCCATTATCGCAATCTTGATG
TGAGCACAGTAAAAGAACTGGTCAAGCGCTGGAGTCCAGAAATTATGGAGGGCTTTAAGAAGCAAAATACCCATCAAGCA
CTACAAGATATCCAAGAGTCGATTGCAGAATTACAGTATTACCGCAGCAAAGTATTTAAAATTTGA

Upstream 100 bases:

>100_bases
GTCAATTAGATTATTTTTTGTGTTGGAAAAAAGCAGTATGATACACGCTCTTGAATAAAAAAGCCTGAATTTAGGCTAAC
TGACATGATAAGGCTGATTT

Downstream 100 bases:

>100_bases
CCGATTAGCAGATAAATCTGAAAGAAGGGGTTGCAGCCGCATGAATTTTTCATATAATGCGGCCTCGACTTTTTGATGCG
AACGGATGTTCTAGTCATTT

Product: oligoribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKHHGESGLIDRVRASQD
NEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPEIMEGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI

Sequences:

>Translated_181_residues
MTANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKHHGESGLIDRVRASQD
NEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPEIMEGFKKQNTHQA
LQDIQESIAELQYYRSKVFKI
>Mature_180_residues
TANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDDWNQKHHGESGLIDRVRASQDN
EAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYMRELEDYFHYRNLDVSTVKELVKRWSPEIMEGFKKQNTHQAL
QDIQESIAELQYYRSKVFKI

Specific function: 3'-to-5' exoribonuclease specific for small oligoribonucleotides [H]

COG id: COG1949

COG function: function code A; Oligoribonuclease (3'->5' exoribonuclease)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 exonuclease domain [H]

Homologues:

Organism=Homo sapiens, GI224496106, Length=173, Percent_Identity=49.7109826589595, Blast_Score=185, Evalue=2e-47,
Organism=Escherichia coli, GI87082382, Length=181, Percent_Identity=65.1933701657459, Blast_Score=258, Evalue=2e-70,
Organism=Caenorhabditis elegans, GI17557752, Length=172, Percent_Identity=48.2558139534884, Blast_Score=166, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6323088, Length=182, Percent_Identity=39.5604395604396, Blast_Score=124, Evalue=8e-30,
Organism=Drosophila melanogaster, GI21355135, Length=175, Percent_Identity=48, Blast_Score=186, Evalue=6e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR022894
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 20818; Mature: 20687

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDD
CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCHHHHHHHHH
WNQKHHGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYM
HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNLDVSTVKELVKRWSPEIMEGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
I
C
>Mature Secondary Structure 
TANVNNLIWIDLEMTGLEPDVDRIIEIATLVTDQELNIIGQGPVIAIHQPDEVLAAMDD
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCCEEEEECCHHHHHHHHH
WNQKHHGESGLIDRVRASQDNEAQAVAKTIAFLEQYVPKGASPMCGNSVGQDRRFLNRYM
HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
RELEDYFHYRNLDVSTVKELVKRWSPEIMEGFKKQNTHQALQDIQESIAELQYYRSKVFK
HHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA