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The map label for this gene is rraB [H]

Identifier: 120597465

GI number: 120597465

Start: 690658

End: 691062

Strand: Direct

Name: rraB [H]

Synonym: Sputw3181_0634

Alternate gene names: 120597465

Gene position: 690658-691062 (Clockwise)

Preceding gene: 120597464

Following gene: 120597468

Centisome position: 14.67

GC content: 43.7

Gene sequence:

>405_bases
ATGTCTATTGAAAGTCAGTTAAAAGCACAACTTGCCGAGAATCGCGACATAGTGCAAGCCCTACTCGATGATGGCTCTGA
GCCTGATGCGGAGTATGTGATTGAGCATCATTTTTCATCAACCAACTTTGATCGCCTCGAAAAAGCAGCAGTAGATGCCT
TTAAACTGGGCTTTGAAGTCAACGATGCCGAAGAAATGGAGTTAGAAGATGGCTCTGTGATCTTCTGTTTCGATGCAGTG
GCTCACCATAAGTTAGATGTAGCATTAATTGATAAAGCGACTGAGCAATTGCTACAGTTAGCCGCTAAACAGAAAGTGGA
CTACGATGGTTGGGGCACTTATTTTGTTGGCGATGATATGGATGACGAGGATGAAGACGAAGAAGATGACGGATTTCCGC
ATTAA

Upstream 100 bases:

>100_bases
ATAAACCGAGAAGCGGCAACATTAATGGGTAAAACTCCTATGGATGATGGCGTATAATAGCCTCAATTTGAGCCAGATTT
ATCTTAACGGAGACACGTTT

Downstream 100 bases:

>100_bases
TTTAGATTAAGTGTTAAGCATCCACAAAGACAATAAAGCCCATTGAGATGGGCTTTATTGTCTTTAAAATCATGTGATTA
TTGTTTTTTCAGTATGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYVIEHHFSSTNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAV
AHHKLDVALIDKATEQLLQLAAKQKVDYDGWGTYFVGDDMDDEDEDEEDDGFPH

Sequences:

>Translated_134_residues
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYVIEHHFSSTNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAV
AHHKLDVALIDKATEQLLQLAAKQKVDYDGWGTYFVGDDMDDEDEDEEDDGFPH
>Mature_133_residues
SIESQLKAQLAENRDIVQALLDDGSEPDAEYVIEHHFSSTNFDRLEKAAVDAFKLGFEVNDAEEMELEDGSVIFCFDAVA
HHKLDVALIDKATEQLLQLAAKQKVDYDGWGTYFVGDDMDDEDEDEEDDGFPH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=53.9130434782609, Blast_Score=129, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 15087; Mature: 14956

Theoretical pI: Translated: 3.79; Mature: 3.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIESQLKAQLAENRDIVQALLDDGSEPDAEYVIEHHFSSTNFDRLEKAAVDAFKLGFEV
CCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIFCFDAVAHHKLDVALIDKATEQLLQLAAKQKVDYDGWGTYFVGDDM
CCCCCCEECCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
DDEDEDEEDDGFPH
CCCCCCCCCCCCCC
>Mature Secondary Structure 
SIESQLKAQLAENRDIVQALLDDGSEPDAEYVIEHHFSSTNFDRLEKAAVDAFKLGFEV
CHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
NDAEEMELEDGSVIFCFDAVAHHKLDVALIDKATEQLLQLAAKQKVDYDGWGTYFVGDDM
CCCCCCEECCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
DDEDEDEEDDGFPH
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA