| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597197
Identifier: 120597197
GI number: 120597197
Start: 392013
End: 392675
Strand: Direct
Name: 120597197
Synonym: Sputw3181_0366
Alternate gene names: NA
Gene position: 392013-392675 (Clockwise)
Preceding gene: 120597196
Following gene: 120597199
Centisome position: 8.33
GC content: 34.84
Gene sequence:
>663_bases ATGTCGAGTGATAACTTATTGATGAAAAAACAGCAAATAGATCCGTTTTCAGCGTCATTTTCATCCTTGTTAGTAATTGT ATTTTCTAAAAGTAATTCGAAAAACTTTCCTTTAGCACTGAACATTGCTCAAGGAGCAGAAAAATTCGTAGAGACCACAG TGTCAGGAAAAACAACATATAGCGTTTGTTTTGGTGGCAATCAGGTAGATGCAGCAAGGGCAATCGCATTTTTAGACTAT GCAGCTTCTTGGAAAGGAGTCCAAATTTTCTCACAAGGAAAATTAATTCCATCAAGTTATCATATTGTTGAAGTTCTGAA TTGCTACCTGAAATCACAATCTTGTAGGGATTATAAAGCTCATTGCCAAACCGTCATTGATGATCCATTTAATACCGAAA TTGAAAAAATTGGTGGTATCGCATTTGTAATAAAAATCACAGAGACGCCAACTATTAAGCAAGAAATAGAAATAGACCGG TATGCATTTCCTTGTAAACATATATTCCATAGATTTAGGTTTCAATGTGATCATCCTTCTTGTCCAGAAGATCAAATTCA AGCTAAAGCTGTTGACCTAGGTTGTGATTGGTGTCCAAATTTTGATGCTGATAGCTGGAAAAAAATTGGTACCAAAACGG TATTGAAAGAGTTTTTTGAGTAA
Upstream 100 bases:
>100_bases TTAAGAGCTATTCCGAAACGCTTGCCAGATTCGCTTCGTAGTATGGTAAGCATTGCGTCATACCTTAGTGTTTCGTTATT TTTTACAAGGAGATATGAAA
Downstream 100 bases:
>100_bases ATAAAGGCAAACGTGACTGCTACGCAGTCCCATAAGTAAAAGTTAATCCATCAAAATTGTTATCCGAAACTCACTACCAA AGTTGAACTTCTAACAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MSSDNLLMKKQQIDPFSASFSSLLVIVFSKSNSKNFPLALNIAQGAEKFVETTVSGKTTYSVCFGGNQVDAARAIAFLDY AASWKGVQIFSQGKLIPSSYHIVEVLNCYLKSQSCRDYKAHCQTVIDDPFNTEIEKIGGIAFVIKITETPTIKQEIEIDR YAFPCKHIFHRFRFQCDHPSCPEDQIQAKAVDLGCDWCPNFDADSWKKIGTKTVLKEFFE
Sequences:
>Translated_220_residues MSSDNLLMKKQQIDPFSASFSSLLVIVFSKSNSKNFPLALNIAQGAEKFVETTVSGKTTYSVCFGGNQVDAARAIAFLDY AASWKGVQIFSQGKLIPSSYHIVEVLNCYLKSQSCRDYKAHCQTVIDDPFNTEIEKIGGIAFVIKITETPTIKQEIEIDR YAFPCKHIFHRFRFQCDHPSCPEDQIQAKAVDLGCDWCPNFDADSWKKIGTKTVLKEFFE >Mature_219_residues SSDNLLMKKQQIDPFSASFSSLLVIVFSKSNSKNFPLALNIAQGAEKFVETTVSGKTTYSVCFGGNQVDAARAIAFLDYA ASWKGVQIFSQGKLIPSSYHIVEVLNCYLKSQSCRDYKAHCQTVIDDPFNTEIEKIGGIAFVIKITETPTIKQEIEIDRY AFPCKHIFHRFRFQCDHPSCPEDQIQAKAVDLGCDWCPNFDADSWKKIGTKTVLKEFFE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24777; Mature: 24646
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSDNLLMKKQQIDPFSASFSSLLVIVFSKSNSKNFPLALNIAQGAEKFVETTVSGKTTY CCCCCCEEHHHCCCCHHHCCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCEEE SVCFGGNQVDAARAIAFLDYAASWKGVQIFSQGKLIPSSYHIVEVLNCYLKSQSCRDYKA EEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHH HCQTVIDDPFNTEIEKIGGIAFVIKITETPTIKQEIEIDRYAFPCKHIFHRFRFQCDHPS HHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCHHHHCHHHHCCCHHHHHHHHCEECCCCC CPEDQIQAKAVDLGCDWCPNFDADSWKKIGTKTVLKEFFE CCHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSDNLLMKKQQIDPFSASFSSLLVIVFSKSNSKNFPLALNIAQGAEKFVETTVSGKTTY CCCCCEEHHHCCCCHHHCCCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCEEE SVCFGGNQVDAARAIAFLDYAASWKGVQIFSQGKLIPSSYHIVEVLNCYLKSQSCRDYKA EEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHH HCQTVIDDPFNTEIEKIGGIAFVIKITETPTIKQEIEIDRYAFPCKHIFHRFRFQCDHPS HHHHHHCCCCCCHHHHCCCEEEEEEECCCCCCHHHHCHHHHCCCHHHHHHHHCEECCCCC CPEDQIQAKAVDLGCDWCPNFDADSWKKIGTKTVLKEFFE CCHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA