| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597193
Identifier: 120597193
GI number: 120597193
Start: 387808
End: 389502
Strand: Direct
Name: 120597193
Synonym: Sputw3181_0362
Alternate gene names: NA
Gene position: 387808-389502 (Clockwise)
Preceding gene: 120597192
Following gene: 120597194
Centisome position: 8.24
GC content: 34.75
Gene sequence:
>1695_bases ATGAAACTGCTCAAATTAACGACAAAGGTTGATGGATGTATAATTCGAGAGATCGAATTCAAAGATACTCTAAATATCAT CACCAATAAGAGAGATTCGAGTTTATCAGGTAACCAGATCGGTAAGTCTGTGCCTGGTCGTATCATCGATTTCTTGTTAG ACGGTTCTATTGGCCCTATTTATATTGATGAAGAATTCGACACAGCTGAACCGCACATTCATAAGTTATTTAATGAACAC AATGTGACCTGTACCCTTGCGTATATTGGGTTGGACGGTAACATCGCTGAGATCAAACGAAACCTTGCCATTGAAAGTAC TGACAGATCTTATTATGTTAACGATGAAGTTAAGAGCAAAAAAGAGTACAACAATCATATATTGAATACTATGTTCAATG TATATTCTGACAAGCCTACCCTTAGAAAGCTAGCTCCAAAGTTTCTGAGAACAGATACTCATCGAATGACAAAGACAGTC AAGTTCAATGATGATAAGTTTAAGATATCTCAAGCAGATAGAAATACTCTGTTCTTGTACCTATTTAACTTTGGTGATAC TGAAATTCTGAGTGCAATTCAGAGTATTAAAACCTTCCTTAGTAACTATGATAATAAGTTAAAATCATTTAATGGCATTA TAAAGGATGATAAAATCCTTAGTACTATTAATAGCACTCAAAAAGAGCTCCGAAAGCTAGAAAGATCACTACTACTGAGC GAAAACAATATAGATAAGCTAGCGATAATCGGTGAAATTAATCACATCGATAATGAACAAAATAAATTATCTAACCAGAT TCTATCGTTAGATCTAAAAGTAAATAATATAAAGAAGACTCAAAAACTACTTGAAAGCAACAAAAACCATCAACTACTTA GTGAACTCGAGACTATCTATGGCTATGCATCTGTTAAGCTAGGGGCTGTTATTAATGACTATGATAATGTGCTTAAATTT CATAATTATTTGGTCGAGACGAAAACAGAATTTGTTACTGATGGTCTTGATAAGCTTGAAGATCAACTTCTTGATAATAC TCTTAAACTCAAGGCTTTAGAGCAAAATAAATCTTCGCTTTACCATGAACTGAAGTCTAAGAAGAAAATTGAAGAGATCT CAGAGTCCGTCAAGACTATTGGTGAGCTAAATAAAACGCTAATTGAGCTAAATGCTATTGTCGAGAAGAAGAATAGTATA GAAGACAGATTAAAAAAAGAGACTGAAAGACTAGAAGGGCTTTCAGGAAGGCTCGCTGCTGAACTTCAAAACGTTCACAT ATTCGAAACCGAGTTTAAAAAACACTTTAAGGCTTACACCAATACCTTCTATGGGGTCGAATATAACTTCAATCTGAACT TAGATGCTACAAATGGCAATTGCCAACCAACTGTAGATGATATCCAGTCAAACAATGATGGAGGATTGAAACGTCTTGAA GTAATCACTTTTGACTTGTCCTATATAAAAACAGTTGATTCACTTGGTCTTAAAAGACCAACGTTTGTTGTACACGACTC TATAGACGAAGTTGACATTAAGCATATACGTCAATTGTTCGATGAGTCGATAAAACTGTCTGGCCAGCAGGTCGTATCGA TGTTGGTGAGTCAACTCGAAGATAATGATTATGAGAAGTACAAAAATTATATAGTTCTAGAGCTATCTCAGGAGGACAAG TATTTCAAAGTCTAG
Upstream 100 bases:
>100_bases GAAAGTGAGCTTTCTATTTCCATCGACCATATGATCCTAACTCTTGACTGGCTATACACTATTTCTGCTATTAAACAAAA TAACAATGAGGTTTCCATCA
Downstream 100 bases:
>100_bases GTTAATGTATAGAAAGTCTTGTTTTTTTGCTTTGTATATTTCCCCATACTTGAAGTAATCCATCGATAGTTAATTTAGTA AGGCCGATAACTCATTCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MKLLKLTTKVDGCIIREIEFKDTLNIITNKRDSSLSGNQIGKSVPGRIIDFLLDGSIGPIYIDEEFDTAEPHIHKLFNEH NVTCTLAYIGLDGNIAEIKRNLAIESTDRSYYVNDEVKSKKEYNNHILNTMFNVYSDKPTLRKLAPKFLRTDTHRMTKTV KFNDDKFKISQADRNTLFLYLFNFGDTEILSAIQSIKTFLSNYDNKLKSFNGIIKDDKILSTINSTQKELRKLERSLLLS ENNIDKLAIIGEINHIDNEQNKLSNQILSLDLKVNNIKKTQKLLESNKNHQLLSELETIYGYASVKLGAVINDYDNVLKF HNYLVETKTEFVTDGLDKLEDQLLDNTLKLKALEQNKSSLYHELKSKKKIEEISESVKTIGELNKTLIELNAIVEKKNSI EDRLKKETERLEGLSGRLAAELQNVHIFETEFKKHFKAYTNTFYGVEYNFNLNLDATNGNCQPTVDDIQSNNDGGLKRLE VITFDLSYIKTVDSLGLKRPTFVVHDSIDEVDIKHIRQLFDESIKLSGQQVVSMLVSQLEDNDYEKYKNYIVLELSQEDK YFKV
Sequences:
>Translated_564_residues MKLLKLTTKVDGCIIREIEFKDTLNIITNKRDSSLSGNQIGKSVPGRIIDFLLDGSIGPIYIDEEFDTAEPHIHKLFNEH NVTCTLAYIGLDGNIAEIKRNLAIESTDRSYYVNDEVKSKKEYNNHILNTMFNVYSDKPTLRKLAPKFLRTDTHRMTKTV KFNDDKFKISQADRNTLFLYLFNFGDTEILSAIQSIKTFLSNYDNKLKSFNGIIKDDKILSTINSTQKELRKLERSLLLS ENNIDKLAIIGEINHIDNEQNKLSNQILSLDLKVNNIKKTQKLLESNKNHQLLSELETIYGYASVKLGAVINDYDNVLKF HNYLVETKTEFVTDGLDKLEDQLLDNTLKLKALEQNKSSLYHELKSKKKIEEISESVKTIGELNKTLIELNAIVEKKNSI EDRLKKETERLEGLSGRLAAELQNVHIFETEFKKHFKAYTNTFYGVEYNFNLNLDATNGNCQPTVDDIQSNNDGGLKRLE VITFDLSYIKTVDSLGLKRPTFVVHDSIDEVDIKHIRQLFDESIKLSGQQVVSMLVSQLEDNDYEKYKNYIVLELSQEDK YFKV >Mature_564_residues MKLLKLTTKVDGCIIREIEFKDTLNIITNKRDSSLSGNQIGKSVPGRIIDFLLDGSIGPIYIDEEFDTAEPHIHKLFNEH NVTCTLAYIGLDGNIAEIKRNLAIESTDRSYYVNDEVKSKKEYNNHILNTMFNVYSDKPTLRKLAPKFLRTDTHRMTKTV KFNDDKFKISQADRNTLFLYLFNFGDTEILSAIQSIKTFLSNYDNKLKSFNGIIKDDKILSTINSTQKELRKLERSLLLS ENNIDKLAIIGEINHIDNEQNKLSNQILSLDLKVNNIKKTQKLLESNKNHQLLSELETIYGYASVKLGAVINDYDNVLKF HNYLVETKTEFVTDGLDKLEDQLLDNTLKLKALEQNKSSLYHELKSKKKIEEISESVKTIGELNKTLIELNAIVEKKNSI EDRLKKETERLEGLSGRLAAELQNVHIFETEFKKHFKAYTNTFYGVEYNFNLNLDATNGNCQPTVDDIQSNNDGGLKRLE VITFDLSYIKTVDSLGLKRPTFVVHDSIDEVDIKHIRQLFDESIKLSGQQVVSMLVSQLEDNDYEKYKNYIVLELSQEDK YFKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64903; Mature: 64903
Theoretical pI: Translated: 6.22; Mature: 6.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLKLTTKVDGCIIREIEFKDTLNIITNKRDSSLSGNQIGKSVPGRIIDFLLDGSIGPI CCEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE YIDEEFDTAEPHIHKLFNEHNVTCTLAYIGLDGNIAEIKRNLAIESTDRSYYVNDEVKSK EECCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCEEEECCCCEEECCHHHHH KEYNNHILNTMFNVYSDKPTLRKLAPKFLRTDTHRMTKTVKFNDDKFKISQADRNTLFLY HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHEEEEECCCEEEEECCCCCEEEEE LFNFGDTEILSAIQSIKTFLSNYDNKLKSFNGIIKDDKILSTINSTQKELRKLERSLLLS EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ENNIDKLAIIGEINHIDNEQNKLSNQILSLDLKVNNIKKTQKLLESNKNHQLLSELETIY CCCCCEEEEEEECHHCCCHHHHHHHHHEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH GYASVKLGAVINDYDNVLKFHNYLVETKTEFVTDGLDKLEDQLLDNTLKLKALEQNKSSL HHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEHHHHHHHHHH YHELKSKKKIEEISESVKTIGELNKTLIELNAIVEKKNSIEDRLKKETERLEGLSGRLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH ELQNVHIFETEFKKHFKAYTNTFYGVEYNFNLNLDATNGNCQPTVDDIQSNNDGGLKRLE HHHCCEEEHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCEEEE VITFDLSYIKTVDSLGLKRPTFVVHDSIDEVDIKHIRQLFDESIKLSGQQVVSMLVSQLE EEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC DNDYEKYKNYIVLELSQEDKYFKV CCCHHHHCCEEEEEECCCCCCCCC >Mature Secondary Structure MKLLKLTTKVDGCIIREIEFKDTLNIITNKRDSSLSGNQIGKSVPGRIIDFLLDGSIGPI CCEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCE YIDEEFDTAEPHIHKLFNEHNVTCTLAYIGLDGNIAEIKRNLAIESTDRSYYVNDEVKSK EECCCCCCCCHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCEEEECCCCEEECCHHHHH KEYNNHILNTMFNVYSDKPTLRKLAPKFLRTDTHRMTKTVKFNDDKFKISQADRNTLFLY HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHEEEEECCCEEEEECCCCCEEEEE LFNFGDTEILSAIQSIKTFLSNYDNKLKSFNGIIKDDKILSTINSTQKELRKLERSLLLS EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC ENNIDKLAIIGEINHIDNEQNKLSNQILSLDLKVNNIKKTQKLLESNKNHQLLSELETIY CCCCCEEEEEEECHHCCCHHHHHHHHHEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH GYASVKLGAVINDYDNVLKFHNYLVETKTEFVTDGLDKLEDQLLDNTLKLKALEQNKSSL HHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHEEHHHHHHHHHH YHELKSKKKIEEISESVKTIGELNKTLIELNAIVEKKNSIEDRLKKETERLEGLSGRLAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH ELQNVHIFETEFKKHFKAYTNTFYGVEYNFNLNLDATNGNCQPTVDDIQSNNDGGLKRLE HHHCCEEEHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCCHHHHCCCCCCCCEEEE VITFDLSYIKTVDSLGLKRPTFVVHDSIDEVDIKHIRQLFDESIKLSGQQVVSMLVSQLE EEEECHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC DNDYEKYKNYIVLELSQEDKYFKV CCCHHHHCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA