| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597177
Identifier: 120597177
GI number: 120597177
Start: 372626
End: 373585
Strand: Direct
Name: 120597177
Synonym: Sputw3181_0346
Alternate gene names: NA
Gene position: 372626-373585 (Clockwise)
Preceding gene: 120597176
Following gene: 120597179
Centisome position: 7.91
GC content: 39.69
Gene sequence:
>960_bases ATGAAGTTATATGTAATTGGTAATGGCTTTGATGTTCATCATGGTCTCGACACAAAATACACATCATTTGGGTTATATCT TAAAAACAACTATTGGGAAACCTATGACTTATTGATCGAGCATTATGGATTCGGTGATCTCAATCCAGATTACCCTACAT CAATGTCAGACCTTTTATGGTCTGAATTTGAAACGAGTATGTCACTGCTTGATAAAGATTCAGTTTTGGAAGCAAACATG GATGCAATGCCAAGCTATTCTTCAGATGACTTTCGAGACAGAGACCGATACACGCTTGAAATTGAGATGGAGCGAATACT TGGGCTTCTAACCACTGATCTGTATAAGGCATTCAAAGAGTTCATTTTGTCTGTGCAGTTTCCTCAGTTTGATCACAGCC GATCAGTAAACATTGATAGAGACGCTGTTTACCTCACATTCAACTACACAGATACGCTTTCTAAATACTACGCAATCCCC GATGAAAACCTGCTATTCATTCACGGGAAAGCCGATGAGCATGTTGATAAATTAATTCTCGGTCATGGTGTTGATCCTGA AAATTTCAAAGAGAGACTTGCCGAACCACCATTAGGATTGAGTGATGAAGATTTAGAACGTTGGATGGAATATCAATCTG ATCAATATGACTATTCATTCGAGCGTGGCAAGGATGCCATCAATCAGTATTTCTCAGCAACTTTCAAGGGAACAGACCAG ATCATAAAAAACAACGAAGATTTCTTTGCAAAGCTCGGCAATATTGATGAAGTATATGTTCTCGGCCACTCATTAGCTGA CGTAGATTTACCCTACTTCCAGAAGTTGGAGCAATCAGTCAGACCTGATGCCAAATGGGTTGCGACTTTTTATGACTCTG ATGATGAGGAAGTGCACTGTGACACTCTAACTGGACTTGGAATAGCCAACGTTTCAGTTGTCAGAATGGAACAGATCTAA
Upstream 100 bases:
>100_bases TATATTGAAGAGCTGTATTTCCAAGATGCGTACTTCGAACTGACTGATAATGACTCTGAAATCATTCACTTCAAAGAACT AGATATCAATGGGGAATAAC
Downstream 100 bases:
>100_bases GCAAAAACTGAAATATCATTAGCGATTGCTGTGGATTCTAGCATTGCTTTTTCTAAATTTTTCTTATGTGAAGCATTCAA TTTTGAACATCAGCTCTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI
Sequences:
>Translated_319_residues MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI >Mature_319_residues MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37062; Mature: 37062
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLW CEEEEEECCEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH SEFETSMSLLDKDSVLEANMDAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKE HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH FILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIPDENLLFIHGKADEHVDKLIL HHHEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHEEECCCCCEEEEECCCHHHHHHHHH GHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHC HHHCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEE DTLTGLGIANVSVVRMEQI EHCCCCCCCCEEEEEEECC >Mature Secondary Structure MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLW CEEEEEECCEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH SEFETSMSLLDKDSVLEANMDAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKE HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH FILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIPDENLLFIHGKADEHVDKLIL HHHEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHEEECCCCCEEEEECCCHHHHHHHHH GHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHC HHHCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEE DTLTGLGIANVSVVRMEQI EHCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA