Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597177

Identifier: 120597177

GI number: 120597177

Start: 372626

End: 373585

Strand: Direct

Name: 120597177

Synonym: Sputw3181_0346

Alternate gene names: NA

Gene position: 372626-373585 (Clockwise)

Preceding gene: 120597176

Following gene: 120597179

Centisome position: 7.91

GC content: 39.69

Gene sequence:

>960_bases
ATGAAGTTATATGTAATTGGTAATGGCTTTGATGTTCATCATGGTCTCGACACAAAATACACATCATTTGGGTTATATCT
TAAAAACAACTATTGGGAAACCTATGACTTATTGATCGAGCATTATGGATTCGGTGATCTCAATCCAGATTACCCTACAT
CAATGTCAGACCTTTTATGGTCTGAATTTGAAACGAGTATGTCACTGCTTGATAAAGATTCAGTTTTGGAAGCAAACATG
GATGCAATGCCAAGCTATTCTTCAGATGACTTTCGAGACAGAGACCGATACACGCTTGAAATTGAGATGGAGCGAATACT
TGGGCTTCTAACCACTGATCTGTATAAGGCATTCAAAGAGTTCATTTTGTCTGTGCAGTTTCCTCAGTTTGATCACAGCC
GATCAGTAAACATTGATAGAGACGCTGTTTACCTCACATTCAACTACACAGATACGCTTTCTAAATACTACGCAATCCCC
GATGAAAACCTGCTATTCATTCACGGGAAAGCCGATGAGCATGTTGATAAATTAATTCTCGGTCATGGTGTTGATCCTGA
AAATTTCAAAGAGAGACTTGCCGAACCACCATTAGGATTGAGTGATGAAGATTTAGAACGTTGGATGGAATATCAATCTG
ATCAATATGACTATTCATTCGAGCGTGGCAAGGATGCCATCAATCAGTATTTCTCAGCAACTTTCAAGGGAACAGACCAG
ATCATAAAAAACAACGAAGATTTCTTTGCAAAGCTCGGCAATATTGATGAAGTATATGTTCTCGGCCACTCATTAGCTGA
CGTAGATTTACCCTACTTCCAGAAGTTGGAGCAATCAGTCAGACCTGATGCCAAATGGGTTGCGACTTTTTATGACTCTG
ATGATGAGGAAGTGCACTGTGACACTCTAACTGGACTTGGAATAGCCAACGTTTCAGTTGTCAGAATGGAACAGATCTAA

Upstream 100 bases:

>100_bases
TATATTGAAGAGCTGTATTTCCAAGATGCGTACTTCGAACTGACTGATAATGACTCTGAAATCATTCACTTCAAAGAACT
AGATATCAATGGGGAATAAC

Downstream 100 bases:

>100_bases
GCAAAAACTGAAATATCATTAGCGATTGCTGTGGATTCTAGCATTGCTTTTTCTAAATTTTTCTTATGTGAAGCATTCAA
TTTTGAACATCAGCTCTAAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM
DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP
DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ
IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI

Sequences:

>Translated_319_residues
MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM
DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP
DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ
IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI
>Mature_319_residues
MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLWSEFETSMSLLDKDSVLEANM
DAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKEFILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIP
DENLLFIHGKADEHVDKLILGHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ
IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHCDTLTGLGIANVSVVRMEQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37062; Mature: 37062

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLW
CEEEEEECCEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
SEFETSMSLLDKDSVLEANMDAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKE
HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
FILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIPDENLLFIHGKADEHVDKLIL
HHHEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHEEECCCCCEEEEECCCHHHHHHHHH
GHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHC
HHHCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEE
DTLTGLGIANVSVVRMEQI
EHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKLYVIGNGFDVHHGLDTKYTSFGLYLKNNYWETYDLLIEHYGFGDLNPDYPTSMSDLLW
CEEEEEECCEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
SEFETSMSLLDKDSVLEANMDAMPSYSSDDFRDRDRYTLEIEMERILGLLTTDLYKAFKE
HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHH
FILSVQFPQFDHSRSVNIDRDAVYLTFNYTDTLSKYYAIPDENLLFIHGKADEHVDKLIL
HHHEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHEEECCCCCEEEEECCCHHHHHHHHH
GHGVDPENFKERLAEPPLGLSDEDLERWMEYQSDQYDYSFERGKDAINQYFSATFKGTDQ
CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
IIKNNEDFFAKLGNIDEVYVLGHSLADVDLPYFQKLEQSVRPDAKWVATFYDSDDEEVHC
HHHCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEE
DTLTGLGIANVSVVRMEQI
EHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA