| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597175
Identifier: 120597175
GI number: 120597175
Start: 370887
End: 371285
Strand: Direct
Name: 120597175
Synonym: Sputw3181_0344
Alternate gene names: NA
Gene position: 370887-371285 (Clockwise)
Preceding gene: 120597174
Following gene: 120597176
Centisome position: 7.88
GC content: 43.86
Gene sequence:
>399_bases ATGGCAAACGTAAAAACTAAGTTGCTCAATGCCTTTGAGTCGCTCAAAAGTGAAGGCAAAAAAATTAGCCCTTACGCTGT CGAAAAACGAGCGGGCGTGGCGAACGGCTCATGCAAAAATCACCCCGCAGTATTAGAGATTATTTTGGATGAAAAGGCTC GCTACCACCCTAACCCCACTGTTGCTAAGAAGGGGGAACCTAGGCAGAAAAAGCATATTGATAAGGAGCGGTATGATGAC TTGGAAGAATCTAACAAGCGCTTGAGAGCTGAGAGTGGCCAGTTTAGAGATGAAATGAAGGTCATGGCAACTTTCGTAGC ACAGTTAACATGGGAGTTGCACCGCTACAAAACATCAACAAGACAGCACTCTATTAATGTGAAGAATATTAAGGTGTAA
Upstream 100 bases:
>100_bases AGAACACACTTGCTCGTGAGTTGACGGATATCCGTGCCGCTGAAAAGGTCATGCGTGATCACAACATCGAATTTAAACGA TTTAAATTAGGGGCTTTGTA
Downstream 100 bases:
>100_bases AGCCGAAAAGCAGAACTGATAGATTGCCCAACTCAGTTCTGTCCATAGGCGAGTTAGTTAACTGAACCAACTCGATTCTG CCCCTAAATCATTTATAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MANVKTKLLNAFESLKSEGKKISPYAVEKRAGVANGSCKNHPAVLEIILDEKARYHPNPTVAKKGEPRQKKHIDKERYDD LEESNKRLRAESGQFRDEMKVMATFVAQLTWELHRYKTSTRQHSINVKNIKV
Sequences:
>Translated_132_residues MANVKTKLLNAFESLKSEGKKISPYAVEKRAGVANGSCKNHPAVLEIILDEKARYHPNPTVAKKGEPRQKKHIDKERYDD LEESNKRLRAESGQFRDEMKVMATFVAQLTWELHRYKTSTRQHSINVKNIKV >Mature_131_residues ANVKTKLLNAFESLKSEGKKISPYAVEKRAGVANGSCKNHPAVLEIILDEKARYHPNPTVAKKGEPRQKKHIDKERYDDL EESNKRLRAESGQFRDEMKVMATFVAQLTWELHRYKTSTRQHSINVKNIKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15190; Mature: 15058
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANVKTKLLNAFESLKSEGKKISPYAVEKRAGVANGSCKNHPAVLEIILDEKARYHPNPT CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEHEEECCCCCCCCCCC VAKKGEPRQKKHIDKERYDDLEESNKRLRAESGQFRDEMKVMATFVAQLTWELHRYKTST CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQHSINVKNIKV HHHCCCCCEECC >Mature Secondary Structure ANVKTKLLNAFESLKSEGKKISPYAVEKRAGVANGSCKNHPAVLEIILDEKARYHPNPT CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCEEHEEECCCCCCCCCCC VAKKGEPRQKKHIDKERYDDLEESNKRLRAESGQFRDEMKVMATFVAQLTWELHRYKTST CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RQHSINVKNIKV HHHCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA