| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597174
Identifier: 120597174
GI number: 120597174
Start: 368983
End: 370887
Strand: Direct
Name: 120597174
Synonym: Sputw3181_0343
Alternate gene names: NA
Gene position: 368983-370887 (Clockwise)
Preceding gene: 120597173
Following gene: 120597175
Centisome position: 7.84
GC content: 45.2
Gene sequence:
>1905_bases ATGTATAGCGTCAGTTATGATGTTGGTAAGTTTGAACAATATGCATTCCCATCAATGCCGGGCTCGTTCCCCATGCCTTG CGATGAGACGGTGGTGAGCGTGGATAAGGATGGTAACCCCGTCTCCTATTTCAAAGATGACATTTGGGACTTTAATGCGT TTTTTAATCTCACCAACGAATCAAAATCGCTATACCAGATAAATTTCCATCCTAAAAAGCACAACCCCGAGCTGCTTATC GAACTCAAACAACGGATCTATTTTTTGATTTGGGGGTCGCAGGGGAGCCTGCTACACATGGAAGGAGACGCGTTTCGTAA GTTCAGCCATTGCCATGATTTAGCAAGGTGGTCAAACGCTGCCCTGAGGGTATTTAAAGGTACCCCCATCGATTCCTTTC CCTTGCTCAGCAATGAACTGGTCTTTGGTCAATTGCTGTATGAGGGAAAAAAGCACAGTGAAGAAACGGTATCTCATCGC TTAAAAGCACTGAGCGTCCTTACGCAACTAAATCAACATTTCCCAGAACCGCGTCGCTTTTCACTTGGCCTTCCTGAAGG TAAAACAATCAAAAAAATGGCCAAGCAGTATTCAGCGGCAGGCCGTGGGCATTACCCTACGGTTATCCCTGTTATTTATG AACAGTTGATGGGGCGCTTGATAGAAAATGTCACCACGGCTCATAATAAGCTGGAAGACCTTGGCGATGTAAAAGCTTAT GCCAAGAAATATGTCGTAACAGAGCGCCAAGCCTATGATGAATTCAGGGCGATAGGAGGCGCTTGCTTTATGACGCTTTC TGCATTTACGGGGATGCGAATTAGCGAGCTAACCCAAATTGACTCCACCTCTTACAAAGAAGTTGACCTTGATGGTATTA AACTATGCACCCTGCGCTCTTGGACTCGTAAGTTAGATAAATTACCCAGAGAAGACGCATGGGCCTGCGCTCCTATCTGT AAAAAGGCGCTAGAGGTCTTAACCGTGCTCAACGACAGCTATCGCTCTAATAAGGGGAGCATTCACTGTTCACCGCGATT TCGTCTTGATGGTAGCTCTGGGAAAGGTGACAACATCTCTAGTCAGTTAGAAGATGTCGTGTTAAACAAACAAAACCTTA GTAGCCTCTTCGTATATTACTCAAAGCACTTAGATATTACTTACGACCCAGATGAAATGGATGAAGTGTATGGCTTGCTT AACCCTGTTGTACCCGCGATATATATCCCTATTAAAGAACGGGGAGATGGCTCAATTTACTGGCATTTTACGACGCACTC GTTGAGGCGTACCTTTGCTCATTTTGTGGTGGGGAATGGCCTGGTATCTCTTGCCGCTTTGAAGCACCAGTTTAAACATA TCAGACTATCAATGACGGCTATCTATGCCAGTCATGCAGAAGTCTTAACGCTGCTTGGTATAGAGAATCCTGCCAACATT AAAAAAGCGGTTGAAGACGCAGAGATGGAAAGCCACAAAACGTACTTACGGGACATGATAGCCCACCCCGAAGAGCAGTC AGGTGGGTTTATGAAGGTGTTTGAGGGTGACCCTCGTGTAATGACAGAAGAGCAATTTGAAGAGCTTGCTCAGAAAACCA AAGAGGCAAATAAATCGACTGGTTATGGACGGTGCTTTGCTGGTTTTAAGTGCAAAATGGAACACCTGTTTGAGCAATCG AGTTGTCTTGGTCGTGACTGTGAAAATTTAAATATCAATAAGGATGAAGCGTTGCGCTGGCAAGCGCGTCACGGACGAAT CGCGGTACGATTACAGCAAATGAAGGAGATGGGGTTCTACAACCAGAACACACTTGCTCGTGAGTTGACGGATATCCGTG CCGCTGAAAAGGTCATGCGTGATCACAACATCGAATTTAAACGATTTAAATTAGGGGCTTTGTAA
Upstream 100 bases:
>100_bases TAAAAAGGCTCATCTCAAAGCTGCAATGAAGCTACTAGAGCGCGAATGTCACCCTTTGTGGGACGAAAATTCAGTCATGG ACATATTCAGAGGATAAACC
Downstream 100 bases:
>100_bases TGGCAAACGTAAAAACTAAGTTGCTCAATGCCTTTGAGTCGCTCAAAAGTGAAGGCAAAAAAATTAGCCCTTACGCTGTC GAAAAACGAGCGGGCGTGGC
Product: phage integrase family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 634; Mature: 634
Protein sequence:
>634_residues MYSVSYDVGKFEQYAFPSMPGSFPMPCDETVVSVDKDGNPVSYFKDDIWDFNAFFNLTNESKSLYQINFHPKKHNPELLI ELKQRIYFLIWGSQGSLLHMEGDAFRKFSHCHDLARWSNAALRVFKGTPIDSFPLLSNELVFGQLLYEGKKHSEETVSHR LKALSVLTQLNQHFPEPRRFSLGLPEGKTIKKMAKQYSAAGRGHYPTVIPVIYEQLMGRLIENVTTAHNKLEDLGDVKAY AKKYVVTERQAYDEFRAIGGACFMTLSAFTGMRISELTQIDSTSYKEVDLDGIKLCTLRSWTRKLDKLPREDAWACAPIC KKALEVLTVLNDSYRSNKGSIHCSPRFRLDGSSGKGDNISSQLEDVVLNKQNLSSLFVYYSKHLDITYDPDEMDEVYGLL NPVVPAIYIPIKERGDGSIYWHFTTHSLRRTFAHFVVGNGLVSLAALKHQFKHIRLSMTAIYASHAEVLTLLGIENPANI KKAVEDAEMESHKTYLRDMIAHPEEQSGGFMKVFEGDPRVMTEEQFEELAQKTKEANKSTGYGRCFAGFKCKMEHLFEQS SCLGRDCENLNINKDEALRWQARHGRIAVRLQQMKEMGFYNQNTLARELTDIRAAEKVMRDHNIEFKRFKLGAL
Sequences:
>Translated_634_residues MYSVSYDVGKFEQYAFPSMPGSFPMPCDETVVSVDKDGNPVSYFKDDIWDFNAFFNLTNESKSLYQINFHPKKHNPELLI ELKQRIYFLIWGSQGSLLHMEGDAFRKFSHCHDLARWSNAALRVFKGTPIDSFPLLSNELVFGQLLYEGKKHSEETVSHR LKALSVLTQLNQHFPEPRRFSLGLPEGKTIKKMAKQYSAAGRGHYPTVIPVIYEQLMGRLIENVTTAHNKLEDLGDVKAY AKKYVVTERQAYDEFRAIGGACFMTLSAFTGMRISELTQIDSTSYKEVDLDGIKLCTLRSWTRKLDKLPREDAWACAPIC KKALEVLTVLNDSYRSNKGSIHCSPRFRLDGSSGKGDNISSQLEDVVLNKQNLSSLFVYYSKHLDITYDPDEMDEVYGLL NPVVPAIYIPIKERGDGSIYWHFTTHSLRRTFAHFVVGNGLVSLAALKHQFKHIRLSMTAIYASHAEVLTLLGIENPANI KKAVEDAEMESHKTYLRDMIAHPEEQSGGFMKVFEGDPRVMTEEQFEELAQKTKEANKSTGYGRCFAGFKCKMEHLFEQS SCLGRDCENLNINKDEALRWQARHGRIAVRLQQMKEMGFYNQNTLARELTDIRAAEKVMRDHNIEFKRFKLGAL >Mature_634_residues MYSVSYDVGKFEQYAFPSMPGSFPMPCDETVVSVDKDGNPVSYFKDDIWDFNAFFNLTNESKSLYQINFHPKKHNPELLI ELKQRIYFLIWGSQGSLLHMEGDAFRKFSHCHDLARWSNAALRVFKGTPIDSFPLLSNELVFGQLLYEGKKHSEETVSHR LKALSVLTQLNQHFPEPRRFSLGLPEGKTIKKMAKQYSAAGRGHYPTVIPVIYEQLMGRLIENVTTAHNKLEDLGDVKAY AKKYVVTERQAYDEFRAIGGACFMTLSAFTGMRISELTQIDSTSYKEVDLDGIKLCTLRSWTRKLDKLPREDAWACAPIC KKALEVLTVLNDSYRSNKGSIHCSPRFRLDGSSGKGDNISSQLEDVVLNKQNLSSLFVYYSKHLDITYDPDEMDEVYGLL NPVVPAIYIPIKERGDGSIYWHFTTHSLRRTFAHFVVGNGLVSLAALKHQFKHIRLSMTAIYASHAEVLTLLGIENPANI KKAVEDAEMESHKTYLRDMIAHPEEQSGGFMKVFEGDPRVMTEEQFEELAQKTKEANKSTGYGRCFAGFKCKMEHLFEQS SCLGRDCENLNINKDEALRWQARHGRIAVRLQQMKEMGFYNQNTLARELTDIRAAEKVMRDHNIEFKRFKLGAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72429; Mature: 72429
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYSVSYDVGKFEQYAFPSMPGSFPMPCDETVVSVDKDGNPVSYFKDDIWDFNAFFNLTNE CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCC SKSLYQINFHPKKHNPELLIELKQRIYFLIWGSQGSLLHMEGDAFRKFSHCHDLARWSNA CCEEEEEEECCCCCCHHHHHHHHCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCC ALRVFKGTPIDSFPLLSNELVFGQLLYEGKKHSEETVSHRLKALSVLTQLNQHFPEPRRF EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE SLGLPEGKTIKKMAKQYSAAGRGHYPTVIPVIYEQLMGRLIENVTTAHNKLEDLGDVKAY ECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKYVVTERQAYDEFRAIGGACFMTLSAFTGMRISELTQIDSTSYKEVDLDGIKLCTLRS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEECCCCEEEEHHHH WTRKLDKLPREDAWACAPICKKALEVLTVLNDSYRSNKGSIHCSPRFRLDGSSGKGDNIS HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCCCCHH SQLEDVVLNKQNLSSLFVYYSKHLDITYDPDEMDEVYGLLNPVVPAIYIPIKERGDGSIY HHHHHHHHCHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE WHFTTHSLRRTFAHFVVGNGLVSLAALKHQFKHIRLSMTAIYASHAEVLTLLGIENPANI EEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHH KKAVEDAEMESHKTYLRDMIAHPEEQSGGFMKVFEGDPRVMTEEQFEELAQKTKEANKST HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC GYGRCFAGFKCKMEHLFEQSSCLGRDCENLNINKDEALRWQARHGRIAVRLQQMKEMGFY CCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEHHCCCHHHHHHHHHHHCCCC NQNTLARELTDIRAAEKVMRDHNIEFKRFKLGAL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC >Mature Secondary Structure MYSVSYDVGKFEQYAFPSMPGSFPMPCDETVVSVDKDGNPVSYFKDDIWDFNAFFNLTNE CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCC SKSLYQINFHPKKHNPELLIELKQRIYFLIWGSQGSLLHMEGDAFRKFSHCHDLARWSNA CCEEEEEEECCCCCCHHHHHHHHCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCC ALRVFKGTPIDSFPLLSNELVFGQLLYEGKKHSEETVSHRLKALSVLTQLNQHFPEPRRF EEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE SLGLPEGKTIKKMAKQYSAAGRGHYPTVIPVIYEQLMGRLIENVTTAHNKLEDLGDVKAY ECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKYVVTERQAYDEFRAIGGACFMTLSAFTGMRISELTQIDSTSYKEVDLDGIKLCTLRS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCEECCCCEEEEHHHH WTRKLDKLPREDAWACAPICKKALEVLTVLNDSYRSNKGSIHCSPRFRLDGSSGKGDNIS HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCCCCHH SQLEDVVLNKQNLSSLFVYYSKHLDITYDPDEMDEVYGLLNPVVPAIYIPIKERGDGSIY HHHHHHHHCHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE WHFTTHSLRRTFAHFVVGNGLVSLAALKHQFKHIRLSMTAIYASHAEVLTLLGIENPANI EEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHH KKAVEDAEMESHKTYLRDMIAHPEEQSGGFMKVFEGDPRVMTEEQFEELAQKTKEANKST HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCC GYGRCFAGFKCKMEHLFEQSSCLGRDCENLNINKDEALRWQARHGRIAVRLQQMKEMGFY CCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEHHCCCHHHHHHHHHHHCCCC NQNTLARELTDIRAAEKVMRDHNIEFKRFKLGAL CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA