Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597044

Identifier: 120597044

GI number: 120597044

Start: 235105

End: 235569

Strand: Direct

Name: 120597044

Synonym: Sputw3181_0212

Alternate gene names: NA

Gene position: 235105-235569 (Clockwise)

Preceding gene: 120597030

Following gene: 120597045

Centisome position: 4.99

GC content: 45.59

Gene sequence:

>465_bases
ATGTCTACCGCCGTTATTCGCGCTTTTATCAGCCGCAATCCGAGTCGTAAATCCTTTTGTATTTATGCCGTTTTATTATT
TTTGACTGAAGTCTTAATCGCTTTATATGCACCTGCGGGTTTTATTCGTGGTTTTGTGGGTGATGTACTAGTAGTGATCT
TACTGTTTTGTATGGTGCGGGCTGTCGTTCCGGTTGACAGCCCAGCAGAAAAGTCCCTAGCACAAAACGCAGGCGAGGGC
ATGAAGCGTTTTTTTCAAACTCCTTGGTTGGCGTTTTCGGTATTGCTGTTTGCCTTTGCTATCGAGTTTGGTCAGTATTG
GGGTTTAGTCGACAAGCTAGGCTTGGGCGGAAATCGCTTGGCGCGAATAGTGATAGGTAGCCATTTTGATCCACTCGATC
TCGTGGCGTATTTTGTCGGCTATTTGATCTTACTGAGCTGTTATTGGAAAAGCCGTCAGTCCTAG

Upstream 100 bases:

>100_bases
CGTGTGGTGAGCTTTAAATGTCAACGAAAACTCACTTGTTAACCTATTGGTATTACGGTAAATTCTGCCATCTCAACCGA
GTGAAGGGATTAACTTATTT

Downstream 100 bases:

>100_bases
TGATTTGAATTTGCAAGAGCCGCGTGATGTGTGTGTTCGCGGGTAGGCGAGATAGGTAGGCGAGATAAGTGGGGTAAGGG
ATGCAGCCGATAACGGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEG
MKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS

Sequences:

>Translated_154_residues
MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEG
MKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS
>Mature_153_residues
STAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEGM
KRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17139; Mature: 17007

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVR
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AVVPVDSPAEKSLAQNAGEGMKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRL
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVR
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AVVPVDSPAEKSLAQNAGEGMKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRL
HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA