| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597044
Identifier: 120597044
GI number: 120597044
Start: 235105
End: 235569
Strand: Direct
Name: 120597044
Synonym: Sputw3181_0212
Alternate gene names: NA
Gene position: 235105-235569 (Clockwise)
Preceding gene: 120597030
Following gene: 120597045
Centisome position: 4.99
GC content: 45.59
Gene sequence:
>465_bases ATGTCTACCGCCGTTATTCGCGCTTTTATCAGCCGCAATCCGAGTCGTAAATCCTTTTGTATTTATGCCGTTTTATTATT TTTGACTGAAGTCTTAATCGCTTTATATGCACCTGCGGGTTTTATTCGTGGTTTTGTGGGTGATGTACTAGTAGTGATCT TACTGTTTTGTATGGTGCGGGCTGTCGTTCCGGTTGACAGCCCAGCAGAAAAGTCCCTAGCACAAAACGCAGGCGAGGGC ATGAAGCGTTTTTTTCAAACTCCTTGGTTGGCGTTTTCGGTATTGCTGTTTGCCTTTGCTATCGAGTTTGGTCAGTATTG GGGTTTAGTCGACAAGCTAGGCTTGGGCGGAAATCGCTTGGCGCGAATAGTGATAGGTAGCCATTTTGATCCACTCGATC TCGTGGCGTATTTTGTCGGCTATTTGATCTTACTGAGCTGTTATTGGAAAAGCCGTCAGTCCTAG
Upstream 100 bases:
>100_bases CGTGTGGTGAGCTTTAAATGTCAACGAAAACTCACTTGTTAACCTATTGGTATTACGGTAAATTCTGCCATCTCAACCGA GTGAAGGGATTAACTTATTT
Downstream 100 bases:
>100_bases TGATTTGAATTTGCAAGAGCCGCGTGATGTGTGTGTTCGCGGGTAGGCGAGATAGGTAGGCGAGATAAGTGGGGTAAGGG ATGCAGCCGATAACGGGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEG MKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS
Sequences:
>Translated_154_residues MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEG MKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS >Mature_153_residues STAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVRAVVPVDSPAEKSLAQNAGEGM KRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRLARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17139; Mature: 17007
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVR CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVVPVDSPAEKSLAQNAGEGMKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRL HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STAVIRAFISRNPSRKSFCIYAVLLFLTEVLIALYAPAGFIRGFVGDVLVVILLFCMVR CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH AVVPVDSPAEKSLAQNAGEGMKRFFQTPWLAFSVLLFAFAIEFGQYWGLVDKLGLGGNRL HHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ARIVIGSHFDPLDLVAYFVGYLILLSCYWKSRQS HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA