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The map label for this gene is yhgF [C]

Identifier: 120596942

GI number: 120596942

Start: 133702

End: 136143

Strand: Direct

Name: yhgF [C]

Synonym: Sputw3181_0109

Alternate gene names: 120596942

Gene position: 133702-136143 (Clockwise)

Preceding gene: 120596941

Following gene: 120596943

Centisome position: 2.84

GC content: 47.09

Gene sequence:

>2442_bases
ATGAAATTGATCATGCGCCTGTGGTATCGTGGGCGCAATTACGACTCATCCGTTAAACACGATATTTTATTTATGCAAAC
GACTTCCCAAACCATTGCACATAACATCGCTCAAATCATTGCCCAAGAACTGAATGTTCGTGAGCAGCAAGTTACCGCGA
CCATAGCATTGCTCGACGATGGGGCTACCGTTCCTTTTGTGGCGCGCTACCGTAAAGAAGCTACCGGTGGCTTAGATGAT
ACCCAATTACGTACCCTACATAGTCGTTTAGCCTATCTGCGAGAGTTGAACGATAGACGCCAAGTGATTTTGTCCAGTAT
TCAGGCTCAAGGTAAATTAACCGCAGAGCTGCAATTTGCTATTGATAGTGCCGACAGTAAGACTCGCCTCGAAGATCTCT
ATTTACCCTTCAAACCTAAGCGCCGTACTAAAGGGCAAATCGCCATTGAAGCGGGTCTTGAACCATTAGCCGATGCACTG
CTTGCGGATCGCAATGCCGATACCGAAGCGCTGGCTGCGGATTATATCAATGAAAATGCTGGTTTTGCCGATACTAAAGC
CGTGCTCGAAGGTGCCCGTTATATTTTGATGGAACGCTATGCCGAAGATGCGGAACTATTGCGCAAAGTGCGTGAGCATT
TAAGCCAAAACAGCGTATTAGAAAGCCGTGTGATCGCGGGTAAAGAAAAAGAGGGCGCTAAGTTCCGTGACTATTTCGAG
CACAATGAGTTGTTATCTAAAGTGCCGTCACACCGCGCTTTAGCTATGTTACGTGGTCGCAATGAAGGCTTTTTATCCTT
ATCAATGAATGCCGACCCTAATGCACAAGCAGGTCAAGGCAGTTACTGTGAAGTGATTATTGCTGACCACTTAGGCCTAA
AACTGGGTGATAGCAGTGTTGACCAATGGTTAAAAACCGTAGTGACGGCAACATGGCGCATCAAGATAGCCCTGCAAATG
GAGACCGAGTTTATTTCGCAAATGCGTGAACGTGCTGAAGCCGAAGCCATTAAGGTCTTTGCCCGTAACTTGGGCGATTT
ACTGATGGCGGCCCCCGCTGGTGCAAAAGCCACCATGGGACTCGATCCTGGTTTACGTACTGGTGTTAAAGTGGCTGTGG
TGGATAATACGGGTAAGCTCCTTAGCCATGCGACAATTTTCCCCCATGCACCGCAAAATTTATGGGAAAAATCGATTCGT
ACTTTAGCCAACCTTGTGAATATGCATAAGGTTGAACTGATCGCAATTGGTAACGGTACCGCCTCCCGCGAAACCGACAA
ACTTGCCGCTGAATTAATTGCCAGCCTTACGGACACTCATCCACATTTAACTAAGGTGATGGTTAGTGAAGCGGGTGCCT
CGGTTTATTCTGCTTCAGAATTAGCGGCGCTAGAATTTCCTGAACTCGATGTCTCTATTCGCGGCGCAGTTTCTATCGCC
CGCCGTCTGCAAGATCCTCTGGCTGAGTTAGTGAAAATTGAGCCTAAGTCTATCGGAGTCGGTCAATATCAGCATGATGT
TAGTCAAAGCCAATTATCTAGCTCGCTTGAAGCCGTAGTCGAAGACTGTGTAAACGGTGTGGGTGTTGATTTGAATATGG
CCTCAGTGCCGTTATTGTCGCAAGTCGCTGGTTTAAATAAGACCTTAGCGAAAAATGTGGTCGATTACCGTGATGCCAAT
GGTCAGTTTAAAAACCGTAAAGAGCTACTTAAAGTGCCTCGTTTAGGGCCAAAGGCTTATGAGCAAGCCGCGGGTTTTTT
ACGTATTCGTGAAGGAGATAATCCGCTCGATATGTCTGCCGTGCATCCAGAAGCTTATTCGCTGGTGGAAACCATAGCCA
AAGCTAAACAGGTTGAATTAGCGAGTCTTATTGGTAACTCAGAACTGTTACGAACGATTAATGCACAGGAGTTTATCACG
CCGGAATTTGGTCTCCCTACCGTGACCGATATTTTAGCCGAGCTGGATAAACCGGGACGCGATCCCCGCGGTGAGTTTAA
AACCGCTAAGTTTAAAGAGGGGATTGAAGAACTTAAGCATCTCAAACCCGAAATGATCCTCGAAGGTGTAGTGACGAACG
TGACTAACTTTGGTGCCTTTGTCGATATCGGTGTGCATCAAGACGGTTTAGTCCATATTTCTTCATTGACCGACAAATTT
ATCAGCGATCCCCACACAGTGGTGAAAGCGGGTGATGTGGTGAAGGTTAAAGTGATGGAAGTGGACGTTGAGCGCCGTCG
TATTGGTTTGAGTATGCGTTTGGACGAGGCGATTGATCAAAACAATGCTCAGGTTAAGCATTCATCGCAAACCAAAGCCA
ATCACAAATTGACTTCGTCAGGTAAAACCGCTCGCCCAGCTCAAAAGCCCGCGCCGAAAGCGCCCGCGAATGCGGCTATG
GGTAACGCTTTTGCCGATGCTTTCGCTAAACTGAAAAAGTAA

Upstream 100 bases:

>100_bases
CGTAACGGATTAACCCTCGATGGTTATATGTAGGATGGCTTAGGTGTCCGATTATCATTGCGCAGAAGATCAAACTCTGT
GATTTGATGCTGGCTTTAGC

Downstream 100 bases:

>100_bases
ACCTCGCTGACTCAGACTCGGACAATCCTGTGTCCGAGTCGACACTTTCCATCTATTATTTACAAAACTGTTGCAAAATT
GTGTCATTAAAGAATATAAA

Product: RNA-binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 813; Mature: 813

Protein sequence:

>813_residues
MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDDGATVPFVARYRKEATGGLDD
TQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFAIDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADAL
LADRNADTEALAADYINENAGFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSVDQWLKTVVTATWRIKIALQM
ETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIR
TLANLVNMHKVELIAIGNGTASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLSQVAGLNKTLAKNVVDYRDAN
GQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSAVHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFIT
PEFGLPTVTDILAELDKPGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSSGKTARPAQKPAPKAPANAAM
GNAFADAFAKLKK

Sequences:

>Translated_813_residues
MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDDGATVPFVARYRKEATGGLDD
TQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFAIDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADAL
LADRNADTEALAADYINENAGFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSVDQWLKTVVTATWRIKIALQM
ETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIR
TLANLVNMHKVELIAIGNGTASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLSQVAGLNKTLAKNVVDYRDAN
GQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSAVHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFIT
PEFGLPTVTDILAELDKPGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSSGKTARPAQKPAPKAPANAAM
GNAFADAFAKLKK
>Mature_813_residues
MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDDGATVPFVARYRKEATGGLDD
TQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFAIDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADAL
LADRNADTEALAADYINENAGFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSVDQWLKTVVTATWRIKIALQM
ETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMGLDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIR
TLANLVNMHKVELIAIGNGTASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLSQVAGLNKTLAKNVVDYRDAN
GQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSAVHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFIT
PEFGLPTVTDILAELDKPGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSSGKTARPAQKPAPKAPANAAM
GNAFADAFAKLKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=793, Percent_Identity=32.5346784363178, Blast_Score=360, Evalue=2e-99,
Organism=Homo sapiens, GI27597090, Length=730, Percent_Identity=22.6027397260274, Blast_Score=110, Evalue=6e-24,
Organism=Escherichia coli, GI87082262, Length=758, Percent_Identity=65.0395778364116, Blast_Score=978, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=40.7894736842105, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=729, Percent_Identity=27.8463648834019, Blast_Score=219, Evalue=4e-57,
Organism=Caenorhabditis elegans, GI17552892, Length=280, Percent_Identity=28.9285714285714, Blast_Score=67, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6321552, Length=244, Percent_Identity=25.8196721311475, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320850, Length=126, Percent_Identity=34.1269841269841, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI62484314, Length=796, Percent_Identity=30.6532663316583, Blast_Score=356, Evalue=4e-98,
Organism=Drosophila melanogaster, GI24640080, Length=472, Percent_Identity=22.2457627118644, Blast_Score=89, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 89151; Mature: 89151

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50126 S1 ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDD
CHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECC
GATVPFVARYRKEATGGLDDTQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFA
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
IDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRNADTEALAADYINENA
ECCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
GFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSV
HHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
DQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMG
HHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
LDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIRTLANLVNMHKVELIAIGNGT
CCCCCCCCEEEEEECCCCHHHHHCEECCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCC
ASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHEEECCCCCEEHHHHHHHH
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSA
HHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCCCC
VHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFITPEFGLPTVTDILAELDKPGR
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCC
DPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEHHHHHHHH
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSS
HCCCCCEEECCCEEEEEEEEECHHHHHHCCCEEHHHHHCCCCCEEECCCHHHCCCEECCC
GKTARPAQKPAPKAPANAAMGNAFADAFAKLKK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLIMRLWYRGRNYDSSVKHDILFMQTTSQTIAHNIAQIIAQELNVREQQVTATIALLDD
CHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHEEEEEEECC
GATVPFVARYRKEATGGLDDTQLRTLHSRLAYLRELNDRRQVILSSIQAQGKLTAELQFA
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
IDSADSKTRLEDLYLPFKPKRRTKGQIAIEAGLEPLADALLADRNADTEALAADYINENA
ECCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHCCCC
GFADTKAVLEGARYILMERYAEDAELLRKVREHLSQNSVLESRVIAGKEKEGAKFRDYFE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
HNELLSKVPSHRALAMLRGRNEGFLSLSMNADPNAQAGQGSYCEVIIADHLGLKLGDSSV
HHHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCHHH
DQWLKTVVTATWRIKIALQMETEFISQMRERAEAEAIKVFARNLGDLLMAAPAGAKATMG
HHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
LDPGLRTGVKVAVVDNTGKLLSHATIFPHAPQNLWEKSIRTLANLVNMHKVELIAIGNGT
CCCCCCCCEEEEEECCCCHHHHHCEECCCCCHHHHHHHHHHHHHHHHHCEEEEEEECCCC
ASRETDKLAAELIASLTDTHPHLTKVMVSEAGASVYSASELAALEFPELDVSIRGAVSIA
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHEEECCCCCEEHHHHHHHH
RRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLSSSLEAVVEDCVNGVGVDLNMASVPLLS
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
QVAGLNKTLAKNVVDYRDANGQFKNRKELLKVPRLGPKAYEQAAGFLRIREGDNPLDMSA
HHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCCCC
VHPEAYSLVETIAKAKQVELASLIGNSELLRTINAQEFITPEFGLPTVTDILAELDKPGR
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCCCC
DPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKF
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCEEHHHHHHHH
ISDPHTVVKAGDVVKVKVMEVDVERRRIGLSMRLDEAIDQNNAQVKHSSQTKANHKLTSS
HCCCCCEEECCCEEEEEEEEECHHHHHHCCCEEHHHHHCCCCCEEECCCHHHCCCEECCC
GKTARPAQKPAPKAPANAAMGNAFADAFAKLKK
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]