| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120596889
Identifier: 120596889
GI number: 120596889
Start: 70077
End: 71156
Strand: Direct
Name: 120596889
Synonym: Sputw3181_0056
Alternate gene names: NA
Gene position: 70077-71156 (Clockwise)
Preceding gene: 120596888
Following gene: 120596890
Centisome position: 1.49
GC content: 43.06
Gene sequence:
>1080_bases GTGGAAGAAGTTAAACAAGCCAAAAGACGTTACTTATTGTACATAGCGCAGAACTATTCCTATGCGATGTTAAGGCCGCT ACAACAAGTTATTTGGGATAGAGGCGATGAGGTTAGCTGGTTTTTAGAAGGGGACGAGGTTGATCCTAAGTTTCTGAGAG ACTATGAGCAACGATTACCCAATGTTGATGCTGTGAAAGCATGGAAACCCGACGCGGTATTTGTTCCTGGTAACGTGGTG CCTAGCTTTATTCCTGGCGTAAAAGTCGGTGTATTTCATGGCTTTAATGCGGGAAAAATGAATCACAAGGGCCGCGAGGA TCACTTCGAAATTCGAGGTTGTTTTGACTTATATTGTACTCAAGGTCCCGCGACGACCCTGCCTTTTCTAAAGCTTGTGA AGACGTTTGGAACTTTTACTGTAGCCGAAACGGGTTGGCCAGCGCTTGATCCACTATTTCTTGAAAACAAAGAAAATCCG TATATTAAACATGATGATCCAAGACCTATTGTGCTTTTTTGTTCGACCTTCTCCAGAAGCTTGACCTGTGCTCCTGTGGT GTTTGAGCAAATTAAAGCGCTGTCGCAAAAGAGTCAATGGCGATGGTTAGTGCAATTTCATCCCAAGATGAATTCTAGTA TTGTCGAGCAATACAAGGCATTGGAGAATGAGAATTTACAGTTTGTTGAAACCGATAATGTGATCCCATTGTTGCAAGCT GGGGATGTGATGTTGTGTGACACATCATCGATTCTATTGATGTTCTTGATGCAACATAAGCCAGTAGTCACCTTTAAAAA CCAGTCACCGAAGGATTATTTAATCGATATTAGTCGAGTTGAGGATATTGAATCTGCATTAGTGCGCGCCCTGAGCCGGC CTGACGATTTAATGGTGCATATTCACGATTATTGCAGTCAGATCCACCCAACGGGTGATGGTCAATCTAGTCAGCGTGTT TTGGCTGCCACAGATGCACTCATTGATAAGGGCACCGATTGGCTTAAACCTAAGCCATTGAACTTATTGCGGCATTTTAA AATGCGACGCAAGCTAGGTTATTGGAAGTTTTGTAGCTAA
Upstream 100 bases:
>100_bases GCAGGTTGAGATTTTGGCCAAAGTCGATGCGACCTTAATTGCCGAACAATATTTAGCGTTGGCAAAATAATTTATTCGTT TGTGTTTTAGGAGCATGCTT
Downstream 100 bases:
>100_bases ATATTTTTATAATGTTTATGTTTTTTTAAGTTGAATATTCATAATAAACTGTAGGGTGTTATCGTTATTGTATAATATTT TGAGTGCGAAATTATTTTTA
Product: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 359; Mature: 359
Protein sequence:
>359_residues MEEVKQAKRRYLLYIAQNYSYAMLRPLQQVIWDRGDEVSWFLEGDEVDPKFLRDYEQRLPNVDAVKAWKPDAVFVPGNVV PSFIPGVKVGVFHGFNAGKMNHKGREDHFEIRGCFDLYCTQGPATTLPFLKLVKTFGTFTVAETGWPALDPLFLENKENP YIKHDDPRPIVLFCSTFSRSLTCAPVVFEQIKALSQKSQWRWLVQFHPKMNSSIVEQYKALENENLQFVETDNVIPLLQA GDVMLCDTSSILLMFLMQHKPVVTFKNQSPKDYLIDISRVEDIESALVRALSRPDDLMVHIHDYCSQIHPTGDGQSSQRV LAATDALIDKGTDWLKPKPLNLLRHFKMRRKLGYWKFCS
Sequences:
>Translated_359_residues MEEVKQAKRRYLLYIAQNYSYAMLRPLQQVIWDRGDEVSWFLEGDEVDPKFLRDYEQRLPNVDAVKAWKPDAVFVPGNVV PSFIPGVKVGVFHGFNAGKMNHKGREDHFEIRGCFDLYCTQGPATTLPFLKLVKTFGTFTVAETGWPALDPLFLENKENP YIKHDDPRPIVLFCSTFSRSLTCAPVVFEQIKALSQKSQWRWLVQFHPKMNSSIVEQYKALENENLQFVETDNVIPLLQA GDVMLCDTSSILLMFLMQHKPVVTFKNQSPKDYLIDISRVEDIESALVRALSRPDDLMVHIHDYCSQIHPTGDGQSSQRV LAATDALIDKGTDWLKPKPLNLLRHFKMRRKLGYWKFCS >Mature_359_residues MEEVKQAKRRYLLYIAQNYSYAMLRPLQQVIWDRGDEVSWFLEGDEVDPKFLRDYEQRLPNVDAVKAWKPDAVFVPGNVV PSFIPGVKVGVFHGFNAGKMNHKGREDHFEIRGCFDLYCTQGPATTLPFLKLVKTFGTFTVAETGWPALDPLFLENKENP YIKHDDPRPIVLFCSTFSRSLTCAPVVFEQIKALSQKSQWRWLVQFHPKMNSSIVEQYKALENENLQFVETDNVIPLLQA GDVMLCDTSSILLMFLMQHKPVVTFKNQSPKDYLIDISRVEDIESALVRALSRPDDLMVHIHDYCSQIHPTGDGQSSQRV LAATDALIDKGTDWLKPKPLNLLRHFKMRRKLGYWKFCS
Specific function: Unknown
COG id: COG1887
COG function: function code M; Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41359; Mature: 41359
Theoretical pI: Translated: 7.55; Mature: 7.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEVKQAKRRYLLYIAQNYSYAMLRPLQQVIWDRGDEVSWFLEGDEVDPKFLRDYEQRLP CCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC NVDAVKAWKPDAVFVPGNVVPSFIPGVKVGVFHGFNAGKMNHKGREDHFEIRGCFDLYCT CCCEEECCCCCEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC QGPATTLPFLKLVKTFGTFTVAETGWPALDPLFLENKENPYIKHDDPRPIVLFCSTFSRS CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCCEECCCCCCEEEEEECCCCC LTCAPVVFEQIKALSQKSQWRWLVQFHPKMNSSIVEQYKALENENLQFVETDNVIPLLQA CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECC GDVMLCDTSSILLMFLMQHKPVVTFKNQSPKDYLIDISRVEDIESALVRALSRPDDLMVH CCEEEECCHHHHHHHHHHCCCEEEECCCCCHHHEEEHHHHHHHHHHHHHHHCCCCCEEEE IHDYCSQIHPTGDGQSSQRVLAATDALIDKGTDWLKPKPLNLLRHFKMRRKLGYWKFCS HHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MEEVKQAKRRYLLYIAQNYSYAMLRPLQQVIWDRGDEVSWFLEGDEVDPKFLRDYEQRLP CCHHHHHHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCC NVDAVKAWKPDAVFVPGNVVPSFIPGVKVGVFHGFNAGKMNHKGREDHFEIRGCFDLYCT CCCEEECCCCCEEEECCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEC QGPATTLPFLKLVKTFGTFTVAETGWPALDPLFLENKENPYIKHDDPRPIVLFCSTFSRS CCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCCEECCCCCCEEEEEECCCCC LTCAPVVFEQIKALSQKSQWRWLVQFHPKMNSSIVEQYKALENENLQFVETDNVIPLLQA CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECC GDVMLCDTSSILLMFLMQHKPVVTFKNQSPKDYLIDISRVEDIESALVRALSRPDDLMVH CCEEEECCHHHHHHHHHHCCCEEEECCCCCHHHEEEHHHHHHHHHHHHHHHCCCCCEEEE IHDYCSQIHPTGDGQSSQRVLAATDALIDKGTDWLKPKPLNLLRHFKMRRKLGYWKFCS HHHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA