| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is engB
Identifier: 120596877
GI number: 120596877
Start: 55721
End: 56380
Strand: Direct
Name: engB
Synonym: Sputw3181_0044
Alternate gene names: 120596877
Gene position: 55721-56380 (Clockwise)
Preceding gene: 120596871
Following gene: 120596879
Centisome position: 1.18
GC content: 43.94
Gene sequence:
>660_bases GTGACTGAATCTCATATAGATTTTCGCAGGGCGAAGTTTTTAATTAGTGCACCAGACATTGCACACTTGGATCAATATCT GCCCGGCGATGTTGGTGTTGAGATTGCTTTTGCTGGCCGCTCTAATGCTGGAAAGTCTAGCGCACTCAATGCTTTAACTG AGCAAAAGAGTTTGGCGAGAACCAGTAAAACACCTGGACGGACTCAGCTAATTAACGTCTTTGAACTCGATTCTCAGCGA CGTTTGGTGGATTTGCCTGGTTATGGTTTTGCACAAGTACCACTGGCAATGAAAAACAAATGGCAGCAAGCCTTGGGTGA ATATTTGCAAAAGCGTGCCTGTTTAAGTGGCGTAGTGGTGTTAATGGATATCCGTCATCCTTTAAAAGATTTAGATATGC AGATGATCCAGTGGGCAGTTGCGAGTGAGATCCCTGTTCTGGCTCTACTGACAAAGTCTGACAAGTTAGCTCAAAGTGCC AAAATGAAAACGGTGAATGAAGTGCGTAAAGCTCTGGCAGATTTTGGTGATTGGGTTCTGGTAGAGCCTTTCTCTGCTTT GAAGGGAACTGGTAAGCCTAAAGTCTTAAGTATCTTAAATGAATGGTGTCATCCCCAGTGGTTGAGGGATGAGTTAGATA CCGCAGAACAATCTAACTAA
Upstream 100 bases:
>100_bases TATTTAATGTGATCGGAGTAATATTTTACACGAAAACGTGGAAAAGTAAGCAATTCTTCATTAATTATGGTATTGCGCAG CAAATATTTTGGAGTAAATA
Downstream 100 bases:
>100_bases TCTTTTTATTAACAAAGACTACGCAGCCTAACTTAAGCTGTGTAGTTTGCTTTGTGCCTTCTTTCTATCTTCTGGCAGTA CTTCCCGCCACTTTTCAGAT
Product: ribosome biogenesis GTP-binding protein YsxC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MTESHIDFRRAKFLISAPDIAHLDQYLPGDVGVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELDSQR RLVDLPGYGFAQVPLAMKNKWQQALGEYLQKRACLSGVVVLMDIRHPLKDLDMQMIQWAVASEIPVLALLTKSDKLAQSA KMKTVNEVRKALADFGDWVLVEPFSALKGTGKPKVLSILNEWCHPQWLRDELDTAEQSN
Sequences:
>Translated_219_residues MTESHIDFRRAKFLISAPDIAHLDQYLPGDVGVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELDSQR RLVDLPGYGFAQVPLAMKNKWQQALGEYLQKRACLSGVVVLMDIRHPLKDLDMQMIQWAVASEIPVLALLTKSDKLAQSA KMKTVNEVRKALADFGDWVLVEPFSALKGTGKPKVLSILNEWCHPQWLRDELDTAEQSN >Mature_218_residues TESHIDFRRAKFLISAPDIAHLDQYLPGDVGVEIAFAGRSNAGKSSALNALTEQKSLARTSKTPGRTQLINVFELDSQRR LVDLPGYGFAQVPLAMKNKWQQALGEYLQKRACLSGVVVLMDIRHPLKDLDMQMIQWAVASEIPVLALLTKSDKLAQSAK MKTVNEVRKALADFGDWVLVEPFSALKGTGKPKVLSILNEWCHPQWLRDELDTAEQSN
Specific function: Necessary for normal cell division and for the maintenance of normal septation [H]
COG id: COG0218
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI56549685, Length=165, Percent_Identity=32.1212121212121, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI145693205, Length=199, Percent_Identity=62.8140703517588, Blast_Score=252, Evalue=1e-68, Organism=Saccharomyces cerevisiae, GI6320543, Length=136, Percent_Identity=33.0882352941176, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019987 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 24385; Mature: 24254
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTESHIDFRRAKFLISAPDIAHLDQYLPGDVGVEIAFAGRSNAGKSSALNALTEQKSLAR CCCCHHHHHHHHHEECCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH TSKTPGRTQLINVFELDSQRRLVDLPGYGFAQVPLAMKNKWQQALGEYLQKRACLSGVVV HCCCCCHHHEEEHEECCCCCCEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LMDIRHPLKDLDMQMIQWAVASEIPVLALLTKSDKLAQSAKMKTVNEVRKALADFGDWVL HHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE VEPFSALKGTGKPKVLSILNEWCHPQWLRDELDTAEQSN ECCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC >Mature Secondary Structure TESHIDFRRAKFLISAPDIAHLDQYLPGDVGVEIAFAGRSNAGKSSALNALTEQKSLAR CCCHHHHHHHHHEECCCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH TSKTPGRTQLINVFELDSQRRLVDLPGYGFAQVPLAMKNKWQQALGEYLQKRACLSGVVV HCCCCCHHHEEEHEECCCCCCEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LMDIRHPLKDLDMQMIQWAVASEIPVLALLTKSDKLAQSAKMKTVNEVRKALADFGDWVL HHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE VEPFSALKGTGKPKVLSILNEWCHPQWLRDELDTAEQSN ECCHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA