Click here to switch to the map view.

The map label for this gene is yjdC [H]

Identifier: 119947296

GI number: 119947296

Start: 4508580

End: 4509200

Strand: Direct

Name: yjdC [H]

Synonym: Ping_3701

Alternate gene names: 119947296

Gene position: 4508580-4509200 (Clockwise)

Preceding gene: 119947278

Following gene: 119947297

Centisome position: 98.88

GC content: 43.32

Gene sequence:

>621_bases
ATGAAGTTACAGATCTGTACTATTTTTGTTACAATATTCGAGTTACCAGCCACTAGATTGGATTTTATTGTGTCAAAAAA
GAAACAGCAACTAATTGATATTGCACTTAATTTATTTATGAGTGAGGGGTTTCATGCGACCGGCATAGACCGCATCGTAG
AGGTTTCCGGCATTTCTAAAACCACTATGTATCGTCACTTTGAATCAAAAGAGGTGTTAATCAGAGATGCACTACTTGTC
TTTAGTCAGCGCCAGCAGGCCGCTTGGGAGTTCGATGAGCCTCATCTATTGTCCGCAGAACAACTGATGCTTGCGCGTTT
CGATGAGTTAGAGGCTTTGGTGCAGAGTAAGCATTTCTGTGGTTGTGTGTTTCTCAACGCAAGCGCAGAGTACCCCGATG
AAGAGAGCCTTATTCACCAGGTAGCTATCGCCTACAAAGCAGCATCCCTCGCAGAAACCAAGCGACGCTTAGCCTCTATA
GAAGATAGTGATAACAACCTCGCATTGACTATCGAATTAATTTACGAGGGAGTTGTCGCCCGATTGCTGGTTCAGCAGGA
TTTAGGCTTGATTCAAACAGCTAAAAAAGTGGTGACTGCGGTGCTTAAATCAAAACCATAA

Upstream 100 bases:

>100_bases
TGAAAAAGGAAAGCTGTAAAGTGTGATCATAATTACCTCATGTAGTTGTTTTAAAAAAGTACAGATCGGTACTCTACGGA
GTGAGGGCCGCTAGGTCAAT

Downstream 100 bases:

>100_bases
CGATCTTTTTATCAAAGAGTCATAATAGGAATCATCTTTCTTAAATCCAGTAAAGCTACAAATGATTCAACGGATGGCGA
ATTTTTTTAGAACTTATGCG

Product: transcriptional regulator of TetR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKLQICTIFVTIFELPATRLDFIVSKKKQQLIDIALNLFMSEGFHATGIDRIVEVSGISKTTMYRHFESKEVLIRDALLV
FSQRQQAAWEFDEPHLLSAEQLMLARFDELEALVQSKHFCGCVFLNASAEYPDEESLIHQVAIAYKAASLAETKRRLASI
EDSDNNLALTIELIYEGVVARLLVQQDLGLIQTAKKVVTAVLKSKP

Sequences:

>Translated_206_residues
MKLQICTIFVTIFELPATRLDFIVSKKKQQLIDIALNLFMSEGFHATGIDRIVEVSGISKTTMYRHFESKEVLIRDALLV
FSQRQQAAWEFDEPHLLSAEQLMLARFDELEALVQSKHFCGCVFLNASAEYPDEESLIHQVAIAYKAASLAETKRRLASI
EDSDNNLALTIELIYEGVVARLLVQQDLGLIQTAKKVVTAVLKSKP
>Mature_206_residues
MKLQICTIFVTIFELPATRLDFIVSKKKQQLIDIALNLFMSEGFHATGIDRIVEVSGISKTTMYRHFESKEVLIRDALLV
FSQRQQAAWEFDEPHLLSAEQLMLARFDELEALVQSKHFCGCVFLNASAEYPDEESLIHQVAIAYKAASLAETKRRLASI
EDSDNNLALTIELIYEGVVARLLVQQDLGLIQTAKKVVTAVLKSKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=182, Percent_Identity=29.6703296703297, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23214; Mature: 23214

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQICTIFVTIFELPATRLDFIVSKKKQQLIDIALNLFMSEGFHATGIDRIVEVSGISK
CEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCH
TTMYRHFESKEVLIRDALLVFSQRQQAAWEFDEPHLLSAEQLMLARFDELEALVQSKHFC
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
GCVFLNASAEYPDEESLIHQVAIAYKAASLAETKRRLASIEDSDNNLALTIELIYEGVVA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH
RLLVQQDLGLIQTAKKVVTAVLKSKP
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLQICTIFVTIFELPATRLDFIVSKKKQQLIDIALNLFMSEGFHATGIDRIVEVSGISK
CEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCH
TTMYRHFESKEVLIRDALLVFSQRQQAAWEFDEPHLLSAEQLMLARFDELEALVQSKHFC
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
GCVFLNASAEYPDEESLIHQVAIAYKAASLAETKRRLASIEDSDNNLALTIELIYEGVVA
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHH
RLLVQQDLGLIQTAKKVVTAVLKSKP
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]