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The map label for this gene is ompL [H]

Identifier: 119947215

GI number: 119947215

Start: 4428245

End: 4429177

Strand: Direct

Name: ompL [H]

Synonym: Ping_3613

Alternate gene names: 119947215

Gene position: 4428245-4429177 (Clockwise)

Preceding gene: 119947214

Following gene: 119947217

Centisome position: 97.12

GC content: 40.51

Gene sequence:

>933_bases
ATGAAAAAGACATTATTAGCAACCTTGATCCTTAGCAGTTTCGTTTCAGGCGCGGCAAGTGCAGCAACGGTTTACGACAA
AGAGAATACTAAATTATCAATCGGTGGCAGAGCTGAAGTACGCGCTCTATTTTCCGATGCAGTTGATGGTTCAATGTTAG
ATAAAAGCCGTGCACGTATCAATTTTGAAGGTCAAACAAAAATTTCTCAAGACCTAACTGGTTTTGCTTTTATGGAATAT
GAAATTGAACCTGGCAGTACAGTAAACAACCGCTACCTATTTGCTGGTATTGGCACAAAAGCTGGTGATTTTTCTTACGG
TCGTCAGGACAGCGCTAGCGTACAAATTTCTAATATGACAGATATTGCATCGTATCACTCAGGTGCGCAGCAGATTATTG
CTGCAGCATCGGATAAAGAGTCAAATAACTTTGTATTTGCAAATAACTCTATCCAAGGTTTAGCACTAAAAGCTAACTAT
ATTGCCAACGGTGTTAAGAAAACAGCTACTAGTACCACTCCTGAAGATGCTTTTGGTTTATCAGCTTTGTACTCAATGGA
TATGGGAATAGACTTAGGTGTTTCCTATGCAGAGCAGGATAAACAAGATCAAGTAACGCTAGGTGCGGGATACAAATTTG
AAGATTTATATTTAGCTGCTACCTATGCAATGGGTTCAAAAGCTACAAACAATGATTTCACTTCATTAGAAGTTGCTGCG
CAGTATAAGCTCACAAAAGAATTTCGCATGATCGCAATGTACACCATGGCAGATCAAGATCTATCTGGTGTCACTACTGA
TACAGCAGATTCCGTTGCACTTGAGGGACAATACCGCTTTAATGACAGCCTGCGCACTTACGCTTCATACAAACTGGATA
ACCTAACCGGTGGTGATGATGAGCTGGTAGCAGGTCTACGTTACAACTTCTAA

Upstream 100 bases:

>100_bases
ATAATACTGTCACAGTAAAAAGTTAAGCTTCTTTTTGTAAACAGCCACAGAGCTGAAAAACTAAAAACAAAACCTTTAAC
TAACTATAAATGGAAGAATT

Downstream 100 bases:

>100_bases
TAACTGCTGAGCTGCGGATTTTATGATTAATCCGCATAAAGCAATAGCTAAAAAGACAAGTGGTTGATAAACAGGATTGT
TTATCTTACAAGGAGGTAAC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKKTLLATLILSSFVSGAASAATVYDKENTKLSIGGRAEVRALFSDAVDGSMLDKSRARINFEGQTKISQDLTGFAFMEY
EIEPGSTVNNRYLFAGIGTKAGDFSYGRQDSASVQISNMTDIASYHSGAQQIIAAASDKESNNFVFANNSIQGLALKANY
IANGVKKTATSTTPEDAFGLSALYSMDMGIDLGVSYAEQDKQDQVTLGAGYKFEDLYLAATYAMGSKATNNDFTSLEVAA
QYKLTKEFRMIAMYTMADQDLSGVTTDTADSVALEGQYRFNDSLRTYASYKLDNLTGGDDELVAGLRYNF

Sequences:

>Translated_310_residues
MKKTLLATLILSSFVSGAASAATVYDKENTKLSIGGRAEVRALFSDAVDGSMLDKSRARINFEGQTKISQDLTGFAFMEY
EIEPGSTVNNRYLFAGIGTKAGDFSYGRQDSASVQISNMTDIASYHSGAQQIIAAASDKESNNFVFANNSIQGLALKANY
IANGVKKTATSTTPEDAFGLSALYSMDMGIDLGVSYAEQDKQDQVTLGAGYKFEDLYLAATYAMGSKATNNDFTSLEVAA
QYKLTKEFRMIAMYTMADQDLSGVTTDTADSVALEGQYRFNDSLRTYASYKLDNLTGGDDELVAGLRYNF
>Mature_310_residues
MKKTLLATLILSSFVSGAASAATVYDKENTKLSIGGRAEVRALFSDAVDGSMLDKSRARINFEGQTKISQDLTGFAFMEY
EIEPGSTVNNRYLFAGIGTKAGDFSYGRQDSASVQISNMTDIASYHSGAQQIIAAASDKESNNFVFANNSIQGLALKANY
IANGVKKTATSTTPEDAFGLSALYSMDMGIDLGVSYAEQDKQDQVTLGAGYKFEDLYLAATYAMGSKATNNDFTSLEVAA
QYKLTKEFRMIAMYTMADQDLSGVTTDTADSVALEGQYRFNDSLRTYASYKLDNLTGGDDELVAGLRYNF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1788544, Length=345, Percent_Identity=26.0869565217391, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787160, Length=367, Percent_Identity=25.8855585831063, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786436, Length=363, Percent_Identity=25.3443526170799, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787641, Length=345, Percent_Identity=27.8260869565217, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 33510; Mature: 33510

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLATLILSSFVSGAASAATVYDKENTKLSIGGRAEVRALFSDAVDGSMLDKSRARI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCHHHHHHHHHCCCCCHHCCCCCEE
NFEGQTKISQDLTGFAFMEYEIEPGSTVNNRYLFAGIGTKAGDFSYGRQDSASVQISNMT
EECCCCCHHHCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCH
DIASYHSGAQQIIAAASDKESNNFVFANNSIQGLALKANYIANGVKKTATSTTPEDAFGL
HHHHHHCCHHHHHEECCCCCCCCEEEECCCCCEEEEEEHHHHCCHHHCCCCCCCCHHHHH
SALYSMDMGIDLGVSYAEQDKQDQVTLGAGYKFEDLYLAATYAMGSKATNNDFTSLEVAA
HHHHHHCCCCCCCCCHHCCCCCCCEEEECCCEECCEEEEEEEECCCCCCCCCCCEEEEEE
QYKLTKEFRMIAMYTMADQDLSGVTTDTADSVALEGQYRFNDSLRTYASYKLDNLTGGDD
EEHHHHHEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEECCCHHHHHEEEECCCCCCCH
ELVAGLRYNF
HEEEEEECCC
>Mature Secondary Structure
MKKTLLATLILSSFVSGAASAATVYDKENTKLSIGGRAEVRALFSDAVDGSMLDKSRARI
CCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCCHHHHHHHHHCCCCCHHCCCCCEE
NFEGQTKISQDLTGFAFMEYEIEPGSTVNNRYLFAGIGTKAGDFSYGRQDSASVQISNMT
EECCCCCHHHCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCH
DIASYHSGAQQIIAAASDKESNNFVFANNSIQGLALKANYIANGVKKTATSTTPEDAFGL
HHHHHHCCHHHHHEECCCCCCCCEEEECCCCCEEEEEEHHHHCCHHHCCCCCCCCHHHHH
SALYSMDMGIDLGVSYAEQDKQDQVTLGAGYKFEDLYLAATYAMGSKATNNDFTSLEVAA
HHHHHHCCCCCCCCCHHCCCCCCCEEEECCCEECCEEEEEEEECCCCCCCCCCCEEEEEE
QYKLTKEFRMIAMYTMADQDLSGVTTDTADSVALEGQYRFNDSLRTYASYKLDNLTGGDD
EEHHHHHEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEECCCHHHHHEEEECCCCCCCH
ELVAGLRYNF
HEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8759872 [H]