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The map label for this gene is lafU [H]

Identifier: 119947181

GI number: 119947181

Start: 4395392

End: 4396312

Strand: Reverse

Name: lafU [H]

Synonym: Ping_3579

Alternate gene names: 119947181

Gene position: 4396312-4395392 (Counterclockwise)

Preceding gene: 119947182

Following gene: 119947180

Centisome position: 96.42

GC content: 39.85

Gene sequence:

>921_bases
ATGTACGATAAAAAGCAGCAGATTATTATAATAAAAAAAGGTCGGCACCAAGCGCATGAAGAGCACTCATCGGCATGGAA
GCTGGCATTTGCTGATTTAATGGTTTCTCTGATGTGCGTATTTTTGGTGCTATGGGCATTACAGATTGCAGATAAAAAAG
AAAAAGAAGACATTATACATTATTTTCGCACCGGGCAGATGAGCACGCCGCAAGAGAGAATGTTCGCACAGAAAAATTCT
TTAGTTTCAATACCTTTAATGTCATCTGCTAAAGATAATAATACAGATATTAATGACACGGTAAATAACGCATTAATACA
GGGCGAATATAATACTCAGGAGGAACTGCAGTTCTTAATGAAACGCTTAGATGATCTTGTTGAAGAAATAGATGCCAGTA
ATAATATTTTGATTGAAGTTATCCCGGATGGATTACGCATTCTGTTAACCGCTAGTGAAGATCAAAAAATGTACGAGCGG
GGAGGCACGCAGTTGACCCCTTTTTATGAGGATATGCTGCTTGAATTTTCTTCTGTTTTTAATGCTATTGAAAATGGTGT
GGTGATAACCGGGCATACGGACTCTGCACCTTATAACGGACAGCAAGTCAGCAATTGGGAGCTCTCCTCACAACGAGCAA
ACAGTGCACGCCGTATTATGGAGTTAGGGGGATTAAAAAAAGCCAATATTACTCAGGTGATAGGCATGGCTAATACCAAA
CCAATCGATAAACAGAATGAATTAAGCAGTATTAACAGACGTGTCGAGGTAATTATCCTTACACGTCAGGCGGTTGATGA
TATGAATGATATTTATGGCGGCAGTGACGAACAGTATTCCAAGCTGCTGGCAAAAAAAGATAACGCTACAACATTAGCAA
GCAAAAACAAACCTGTGACCCGGCTGGATTTTGCTGACTGA

Upstream 100 bases:

>100_bases
AGCCTTAGGAAAGCATAAAAATAAGCCATTAGAATAGAGGGAATTAAGATAATAGCAAAGTGGGCAGGTCAATCAGATTC
GGTAAAAAAGGTAAGGGAAA

Downstream 100 bases:

>100_bases
AACTGCTAGCTGCCTTTTACAGATAAGCTAATCTGCGCTACCTAATACGTGACACTCATCACGTTTATTGATCTAACCCG
TGTGTTTTTTGCGCATTACT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MYDKKQQIIIIKKGRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYFRTGQMSTPQERMFAQKNS
LVSIPLMSSAKDNNTDINDTVNNALIQGEYNTQEELQFLMKRLDDLVEEIDASNNILIEVIPDGLRILLTASEDQKMYER
GGTQLTPFYEDMLLEFSSVFNAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTK
PIDKQNELSSINRRVEVIILTRQAVDDMNDIYGGSDEQYSKLLAKKDNATTLASKNKPVTRLDFAD

Sequences:

>Translated_306_residues
MYDKKQQIIIIKKGRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYFRTGQMSTPQERMFAQKNS
LVSIPLMSSAKDNNTDINDTVNNALIQGEYNTQEELQFLMKRLDDLVEEIDASNNILIEVIPDGLRILLTASEDQKMYER
GGTQLTPFYEDMLLEFSSVFNAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTK
PIDKQNELSSINRRVEVIILTRQAVDDMNDIYGGSDEQYSKLLAKKDNATTLASKNKPVTRLDFAD
>Mature_306_residues
MYDKKQQIIIIKKGRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIHYFRTGQMSTPQERMFAQKNS
LVSIPLMSSAKDNNTDINDTVNNALIQGEYNTQEELQFLMKRLDDLVEEIDASNNILIEVIPDGLRILLTASEDQKMYER
GGTQLTPFYEDMLLEFSSVFNAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTK
PIDKQNELSSINRRVEVIILTRQAVDDMNDIYGGSDEQYSKLLAKKDNATTLASKNKPVTRLDFAD

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=284, Percent_Identity=32.0422535211268, Blast_Score=150, Evalue=8e-38,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 34639; Mature: 34639

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDKKQQIIIIKKGRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIH
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YFRTGQMSTPQERMFAQKNSLVSIPLMSSAKDNNTDINDTVNNALIQGEYNTQEELQFLM
HHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHEEEECCCCCHHHHHHHH
KRLDDLVEEIDASNNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYEDMLLEFSSVF
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
NAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTK
HHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
PIDKQNELSSINRRVEVIILTRQAVDDMNDIYGGSDEQYSKLLAKKDNATTLASKNKPVT
CCCCHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCCCCCC
RLDFAD
CCCCCC
>Mature Secondary Structure
MYDKKQQIIIIKKGRHQAHEEHSSAWKLAFADLMVSLMCVFLVLWALQIADKKEKEDIIH
CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
YFRTGQMSTPQERMFAQKNSLVSIPLMSSAKDNNTDINDTVNNALIQGEYNTQEELQFLM
HHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHEEEECCCCCHHHHHHHH
KRLDDLVEEIDASNNILIEVIPDGLRILLTASEDQKMYERGGTQLTPFYEDMLLEFSSVF
HHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
NAIENGVVITGHTDSAPYNGQQVSNWELSSQRANSARRIMELGGLKKANITQVIGMANTK
HHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCC
PIDKQNELSSINRRVEVIILTRQAVDDMNDIYGGSDEQYSKLLAKKDNATTLASKNKPVT
CCCCHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEECCCCCCCC
RLDFAD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]