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The map label for this gene is ydaM [H]

Identifier: 119946997

GI number: 119946997

Start: 4191712

End: 4192932

Strand: Direct

Name: ydaM [H]

Synonym: Ping_3392

Alternate gene names: 119946997

Gene position: 4191712-4192932 (Clockwise)

Preceding gene: 119946996

Following gene: 119947000

Centisome position: 91.93

GC content: 37.26

Gene sequence:

>1221_bases
ATGCTAGAGATGAACAACATTTTTTGCTACGGACAAATCATTATCGCAGATAATATAGTTGTCAGCATCGATCAAAACTT
TATCGATATATTAGGTTTTTCTTCTCTGGATGAAATGTATTCCGCTCAATCTGATCCCTTAGCATTTATTGCTGCGGACT
ATAGTGACGAAATATTAATAAAATCTGAGCGTTTAAATTCAGGCTCTTTCGAGACCCATGGTAATGTTCTTTATTGCACC
AAAAAACAGGGTCAGAAGATTGCAGTGTTTGTATTGGCGCAGCAAATAAATTGGAAAAAGCAACCCGCACTTGAATTACA
AATCTTTGATATCTCTTTAAAGATCAGCGCCCAGCAACTTATCAATAAATCGAGATATGAACGTCTTGTTGAACATTCTG
ATCAAGGCGTTATGATCCATCGAAATTTTAAACCTCTGCTTGTTAACCAGGTCTGGGTTGAACTAATGGCTGCTAAATCC
ATTCAGGATGTGATTGAAAATCTAAATATATTGGATCTTATCCCCACCGAACATCATGCTAGCGCTATTGAACGATACCA
AAAAGTCATCACGGGAGAGGCAATTGGAGAAAGTCATATTATCGAGAATATTCGTTTTGATGGAATAAAACGATTTTTTA
ATATTTATGATCATGCTATTCAATGGCAAGGAGAGCCTGCTGTAGAAGTTGTTATGGTCGATGTTACCGACAAAGTGATG
GCAGAAAAAAGACTTGCCCATAAAGCCTTCCATGATTCGCTGACGGATCTTTATAATCGTGATGCTATCTACAAATGGAT
TCACGAGCATTGCGGTAAAGTCAACTCCATGAGTTGCATGCTTATCGATTTAGATAACTTTAAAAGAGTTAATGATACCT
ATGGTCATTCTAAGGGGGATAATGTCTTAAAAATATTTGCCAATTTATTTAAAGAAAAAATAGCTGAAAAGGGAGTGATA
GGAAGATGGGGAGGGGAAGAGTTTATTGTATTTGTCCCCGACAGAGATAAAAAAACGGCACTTGCACTGGCAGAAAAAGT
CCGGATTGCCTGTGCGCAAACCCCTTTATTCTTGCAGGGTAAAGAGATTATAACAACCGTCAGTATCGGTGTTAGCTATA
CCGACTCTTTTGCGCAAATTAAGCCCAAAGATATTATTAAACAAGCCGACCATAATATGTATTTATCAAAATCATTGGGT
AAAAATCGGGTAACAGGTTAA

Upstream 100 bases:

>100_bases
AAAAAATGTTATAAAATATTCATGACCATTTTTATTGAGCTTCTTGCTGTTAATACCCGCTATAATGGCCAAAGCATGTG
CATAATCAGGAAGGTTTTTA

Downstream 100 bases:

>100_bases
TTTTCTCTGTCTAAATTATTCAAATAAACAATAATTTAGATCTATTAAAGCCCCTATAACTGACCTATATCGACTTACAC
AAGTCCGTCAAAGACTGTTT

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MLEMNNIFCYGQIIIADNIVVSIDQNFIDILGFSSLDEMYSAQSDPLAFIAADYSDEILIKSERLNSGSFETHGNVLYCT
KKQGQKIAVFVLAQQINWKKQPALELQIFDISLKISAQQLINKSRYERLVEHSDQGVMIHRNFKPLLVNQVWVELMAAKS
IQDVIENLNILDLIPTEHHASAIERYQKVITGEAIGESHIIENIRFDGIKRFFNIYDHAIQWQGEPAVEVVMVDVTDKVM
AEKRLAHKAFHDSLTDLYNRDAIYKWIHEHCGKVNSMSCMLIDLDNFKRVNDTYGHSKGDNVLKIFANLFKEKIAEKGVI
GRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQGKEIITTVSIGVSYTDSFAQIKPKDIIKQADHNMYLSKSLG
KNRVTG

Sequences:

>Translated_406_residues
MLEMNNIFCYGQIIIADNIVVSIDQNFIDILGFSSLDEMYSAQSDPLAFIAADYSDEILIKSERLNSGSFETHGNVLYCT
KKQGQKIAVFVLAQQINWKKQPALELQIFDISLKISAQQLINKSRYERLVEHSDQGVMIHRNFKPLLVNQVWVELMAAKS
IQDVIENLNILDLIPTEHHASAIERYQKVITGEAIGESHIIENIRFDGIKRFFNIYDHAIQWQGEPAVEVVMVDVTDKVM
AEKRLAHKAFHDSLTDLYNRDAIYKWIHEHCGKVNSMSCMLIDLDNFKRVNDTYGHSKGDNVLKIFANLFKEKIAEKGVI
GRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQGKEIITTVSIGVSYTDSFAQIKPKDIIKQADHNMYLSKSLG
KNRVTG
>Mature_406_residues
MLEMNNIFCYGQIIIADNIVVSIDQNFIDILGFSSLDEMYSAQSDPLAFIAADYSDEILIKSERLNSGSFETHGNVLYCT
KKQGQKIAVFVLAQQINWKKQPALELQIFDISLKISAQQLINKSRYERLVEHSDQGVMIHRNFKPLLVNQVWVELMAAKS
IQDVIENLNILDLIPTEHHASAIERYQKVITGEAIGESHIIENIRFDGIKRFFNIYDHAIQWQGEPAVEVVMVDVTDKVM
AEKRLAHKAFHDSLTDLYNRDAIYKWIHEHCGKVNSMSCMLIDLDNFKRVNDTYGHSKGDNVLKIFANLFKEKIAEKGVI
GRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQGKEIITTVSIGVSYTDSFAQIKPKDIIKQADHNMYLSKSLG
KNRVTG

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=208, Percent_Identity=36.5384615384615, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=36.6279069767442, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=32.2222222222222, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=31.4917127071823, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=32.2222222222222, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=31.2883435582822, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787541, Length=239, Percent_Identity=26.7782426778243, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787816, Length=129, Percent_Identity=34.8837209302326, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=31.2883435582822, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=199, Percent_Identity=26.1306532663317, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 46156; Mature: 46156

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMNNIFCYGQIIIADNIVVSIDQNFIDILGFSSLDEMYSAQSDPLAFIAADYSDEILI
CCCCCCEEEEEEEEEECCEEEEECCCHHHHHCCCCHHHHHCCCCCCEEEEEECCCCCEEE
KSERLNSGSFETHGNVLYCTKKQGQKIAVFVLAQQINWKKQPALELQIFDISLKISAQQL
EECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEECHHHH
INKSRYERLVEHSDQGVMIHRNFKPLLVNQVWVELMAAKSIQDVIENLNILDLIPTEHHA
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
SAIERYQKVITGEAIGESHIIENIRFDGIKRFFNIYDHAIQWQGEPAVEVVMVDVTDKVM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHH
AEKRLAHKAFHDSLTDLYNRDAIYKWIHEHCGKVNSMSCMLIDLDNFKRVNDTYGHSKGD
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
NVLKIFANLFKEKIAEKGVIGRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQG
HHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
KEIITTVSIGVSYTDSFAQIKPKDIIKQADHNMYLSKSLGKNRVTG
CEEEEEEEECCEECCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MLEMNNIFCYGQIIIADNIVVSIDQNFIDILGFSSLDEMYSAQSDPLAFIAADYSDEILI
CCCCCCEEEEEEEEEECCEEEEECCCHHHHHCCCCHHHHHCCCCCCEEEEEECCCCCEEE
KSERLNSGSFETHGNVLYCTKKQGQKIAVFVLAQQINWKKQPALELQIFDISLKISAQQL
EECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEEEEEECHHHH
INKSRYERLVEHSDQGVMIHRNFKPLLVNQVWVELMAAKSIQDVIENLNILDLIPTEHHA
HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
SAIERYQKVITGEAIGESHIIENIRFDGIKRFFNIYDHAIQWQGEPAVEVVMVDVTDKVM
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHH
AEKRLAHKAFHDSLTDLYNRDAIYKWIHEHCGKVNSMSCMLIDLDNFKRVNDTYGHSKGD
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCC
NVLKIFANLFKEKIAEKGVIGRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQG
HHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
KEIITTVSIGVSYTDSFAQIKPKDIIKQADHNMYLSKSLGKNRVTG
CEEEEEEEECCEECCCHHHCCHHHHHHHCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]