| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is 119946993
Identifier: 119946993
GI number: 119946993
Start: 4186695
End: 4188155
Strand: Direct
Name: 119946993
Synonym: Ping_3388
Alternate gene names: NA
Gene position: 4186695-4188155 (Clockwise)
Preceding gene: 119946991
Following gene: 119946995
Centisome position: 91.82
GC content: 39.56
Gene sequence:
>1461_bases TTGAAGAAAATCAGGCTTAAACAAGAAGAGCGTTTATCAATCAAACTCACTCATCAGATAGATCAAGGTGAGTTTCGTCG TATTGATGTTTATTTTTCTCTGCCAAAAGAGATGAGTATTAATAAAAATACGCTTTCGGAAATGGATTATTTCAATGCAG GAGTTCGAACTCGAAGCGCCTATTTTACTCAAGGTTTACATTTACCCTTATTACATAGCCGTTTTGCCAGTCGTATGAAA CATTCCGCTGTTGAATATCGAAACCACCTGAATCTATTTGCTTATCAATATCTGACCGCACTTAATACCGATACGCATGA CGTAATAAAGATCAATGATAGTGACAAGCTACGGGATTTTTATAATGCAGCACAAGAAATTGCCAATCACAGTATCGTCA TACTAAGCAAAACCCGTGCCCATGCACCTAAAGATCCTAAACTGGGGGCGATTTTTGGCAATGTGGATAATTATCTATCC TGGTATACAGAACAAAGACTACTGGGCATGTTGGCAAAAAAACCGCGTTTATCCGAATTTACTGAAGAGCGTCTTGCACT GTTGCAGATCTGTAAAAATGAAAATTTATATCGCAAAGAAAAAGCCTATAACTCGCAGGCGTCACTTGACGATCCTAACC GGATTGCCAATAAAATGCGCCTATTACGCCGCTTAATTGAGTATGGGGTGATTTTTAAGACGGACACTCAAGCATTAGGT AATATCACCCGTAAAGTTGTTACCGGTGTTGCTACCGCGCTAATAATGAGTGTAGTACTGGTCTTAATTATTAAAACGCA GGGTGCTTTTAGTACCCTGACCTCCTTGATGGTGTTTATTCTCGCAATTATTTACGGGGTGCGGGAAGTTTTCAAGGATG ATTTTAAAAACATTCTCTGGCAGTGGATCCGTAAAGGTAAACCTAAATGGGCCAGAGCATTAATCGATCCGACCAATAAA ACAGAACTGGCAAAACAAAAAATTTGGCTTGATTATATTAAAACGGCCAACCTGCCGATCAAAACCCGGCAGCTGTTGGC AAAACGTAATATGCAGAATAAACAAAGTTCGGAGATATTACATTTTCGTCTTGAAACCAAAGTCGTGAGACAGGGTTTCC AAGCGGGTTATGACACGCTGGAAGAGACGATTGATTTTAGTTTGCTACCTTTTGCGCGCTTTTTAGAACGCGGTAGCGGT AAGCTTTATGAGCAAAATGAGGCATCCTCAAACAAAGAAAAAATTAAAACCACCTCCATTGAGCGACGCTATCAAATAAA TGTGGTGGTTGCATTAGATCAGGGTAAGTACACAGAACAGTTCGAGCGTTATAAAATAACCTTAAACCGCTCTGGCATTA TTGATATTGAAAAAGCAGGCAAATCCGCGATCCAGGATAAACCAGAAGGCGGGCGTTATTCTAAACTAAAAACATTATTA CATTTTAAAAAACAGCGCTAA
Upstream 100 bases:
>100_bases TATCTGGCTGGCATGCCTTTTACCCCCACATAAATGAAGTAAAAAAAGTCGCTTTGGTATGACATCCCCCCCCGTTAGCC ATTCATATTGAGAGGAATAA
Downstream 100 bases:
>100_bases AAAAGAAAGCTATTATTCTGCAACTAAAGTTTCAATGCGATAAAAGCCCTGATTATCAAAACCTAATAGTTTGGCTAAAA AAGGCAATGATGCCTGCATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MKKIRLKQEERLSIKLTHQIDQGEFRRIDVYFSLPKEMSINKNTLSEMDYFNAGVRTRSAYFTQGLHLPLLHSRFASRMK HSAVEYRNHLNLFAYQYLTALNTDTHDVIKINDSDKLRDFYNAAQEIANHSIVILSKTRAHAPKDPKLGAIFGNVDNYLS WYTEQRLLGMLAKKPRLSEFTEERLALLQICKNENLYRKEKAYNSQASLDDPNRIANKMRLLRRLIEYGVIFKTDTQALG NITRKVVTGVATALIMSVVLVLIIKTQGAFSTLTSLMVFILAIIYGVREVFKDDFKNILWQWIRKGKPKWARALIDPTNK TELAKQKIWLDYIKTANLPIKTRQLLAKRNMQNKQSSEILHFRLETKVVRQGFQAGYDTLEETIDFSLLPFARFLERGSG KLYEQNEASSNKEKIKTTSIERRYQINVVVALDQGKYTEQFERYKITLNRSGIIDIEKAGKSAIQDKPEGGRYSKLKTLL HFKKQR
Sequences:
>Translated_486_residues MKKIRLKQEERLSIKLTHQIDQGEFRRIDVYFSLPKEMSINKNTLSEMDYFNAGVRTRSAYFTQGLHLPLLHSRFASRMK HSAVEYRNHLNLFAYQYLTALNTDTHDVIKINDSDKLRDFYNAAQEIANHSIVILSKTRAHAPKDPKLGAIFGNVDNYLS WYTEQRLLGMLAKKPRLSEFTEERLALLQICKNENLYRKEKAYNSQASLDDPNRIANKMRLLRRLIEYGVIFKTDTQALG NITRKVVTGVATALIMSVVLVLIIKTQGAFSTLTSLMVFILAIIYGVREVFKDDFKNILWQWIRKGKPKWARALIDPTNK TELAKQKIWLDYIKTANLPIKTRQLLAKRNMQNKQSSEILHFRLETKVVRQGFQAGYDTLEETIDFSLLPFARFLERGSG KLYEQNEASSNKEKIKTTSIERRYQINVVVALDQGKYTEQFERYKITLNRSGIIDIEKAGKSAIQDKPEGGRYSKLKTLL HFKKQR >Mature_486_residues MKKIRLKQEERLSIKLTHQIDQGEFRRIDVYFSLPKEMSINKNTLSEMDYFNAGVRTRSAYFTQGLHLPLLHSRFASRMK HSAVEYRNHLNLFAYQYLTALNTDTHDVIKINDSDKLRDFYNAAQEIANHSIVILSKTRAHAPKDPKLGAIFGNVDNYLS WYTEQRLLGMLAKKPRLSEFTEERLALLQICKNENLYRKEKAYNSQASLDDPNRIANKMRLLRRLIEYGVIFKTDTQALG NITRKVVTGVATALIMSVVLVLIIKTQGAFSTLTSLMVFILAIIYGVREVFKDDFKNILWQWIRKGKPKWARALIDPTNK TELAKQKIWLDYIKTANLPIKTRQLLAKRNMQNKQSSEILHFRLETKVVRQGFQAGYDTLEETIDFSLLPFARFLERGSG KLYEQNEASSNKEKIKTTSIERRYQINVVVALDQGKYTEQFERYKITLNRSGIIDIEKAGKSAIQDKPEGGRYSKLKTLL HFKKQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56457; Mature: 56457
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIRLKQEERLSIKLTHQIDQGEFRRIDVYFSLPKEMSINKNTLSEMDYFNAGVRTRSA CCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHH YFTQGLHLPLLHSRFASRMKHSAVEYRNHLNLFAYQYLTALNTDTHDVIKINDSDKLRDF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH YNAAQEIANHSIVILSKTRAHAPKDPKLGAIFGNVDNYLSWYTEQRLLGMLAKKPRLSEF HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHH TEERLALLQICKNENLYRKEKAYNSQASLDDPNRIANKMRLLRRLIEYGVIFKTDTQALG HHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHH NITRKVVTGVATALIMSVVLVLIIKTQGAFSTLTSLMVFILAIIYGVREVFKDDFKNILW HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QWIRKGKPKWARALIDPTNKTELAKQKIWLDYIKTANLPIKTRQLLAKRNMQNKQSSEIL HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH HFRLETKVVRQGFQAGYDTLEETIDFSLLPFARFLERGSGKLYEQNEASSNKEKIKTTSI HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH ERRYQINVVVALDQGKYTEQFERYKITLNRSGIIDIEKAGKSAIQDKPEGGRYSKLKTLL CEEEEEEEEEEECCCCCHHHHHHEEEEECCCCCEEHHHCCCHHHCCCCCCCHHHHHHHHH HFKKQR HHHCCC >Mature Secondary Structure MKKIRLKQEERLSIKLTHQIDQGEFRRIDVYFSLPKEMSINKNTLSEMDYFNAGVRTRSA CCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHH YFTQGLHLPLLHSRFASRMKHSAVEYRNHLNLFAYQYLTALNTDTHDVIKINDSDKLRDF HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHH YNAAQEIANHSIVILSKTRAHAPKDPKLGAIFGNVDNYLSWYTEQRLLGMLAKKPRLSEF HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHH TEERLALLQICKNENLYRKEKAYNSQASLDDPNRIANKMRLLRRLIEYGVIFKTDTQALG HHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHH NITRKVVTGVATALIMSVVLVLIIKTQGAFSTLTSLMVFILAIIYGVREVFKDDFKNILW HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QWIRKGKPKWARALIDPTNKTELAKQKIWLDYIKTANLPIKTRQLLAKRNMQNKQSSEIL HHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH HFRLETKVVRQGFQAGYDTLEETIDFSLLPFARFLERGSGKLYEQNEASSNKEKIKTTSI HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH ERRYQINVVVALDQGKYTEQFERYKITLNRSGIIDIEKAGKSAIQDKPEGGRYSKLKTLL CEEEEEEEEEEECCCCCHHHHHHEEEEECCCCCEEHHHCCCHHHCCCCCCCHHHHHHHHH HFKKQR HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA