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The map label for this gene is psd

Identifier: 119946943

GI number: 119946943

Start: 4124738

End: 4125598

Strand: Direct

Name: psd

Synonym: Ping_3337

Alternate gene names: 119946943

Gene position: 4124738-4125598 (Clockwise)

Preceding gene: 119946942

Following gene: 119946944

Centisome position: 90.46

GC content: 41.58

Gene sequence:

>861_bases
ATGATTGACCAACTTAAAATTATTGGGCAATACCTGCTGCCAAAAAAGCTATTATCGCGTCTATTAGGTAAATTAGCCGC
CGCTGAAGCAGGTAAATTAACCACTTTTTTAATCAAAAAATTCATTAACAAATTTAATGTTGATATGAGTGAAGCAAAAT
ATTCAGACCCTGAGTATTTTAAAACTTTTAACGACTTTTTCACCCGTGAATTAAAACCGGAGGCGCGGCAAATTATCGCA
GGTGAAGATAACCTTGCTCATCCTGTGGATGGTGCTGTTAGCCAAATGGGCGATATTAAAGAAGGTCGACTTTTTCAAGC
TAAGGGTCATGATTTTAGCCTGCGAGAACTGTTAGGCGGGCGAGATGATGTTGCTGCGCCCTTTGATAAGGGTTTGTTTT
CTACGATTTACTTAGCGCCTAAAGATTATCACCGTATTCATATGCCGATCACAGGTAAACTTGAACAGATGATTTTTATT
CCCGGCGACCTCTTCTCAGTCAATCCATTAACCGCACAAAATGTCCCGAATTTATTTGCCCGCAATGAGCGTGCTGTGGC
CATTTTTTCAACAGCAGTAGGCCCTGTGGCAATGGTCTTAGTGGGTGCCACGATAGTGGCCAGCATCGAAACCGTTTGGG
CCGGAACACTAACGGCTAATGCTGACAAAGAAATCCAATATTGGGATTACAAAAATCAAGATATTACCCTTGAAAAAGGC
GCTGAAATGGGCCGCTTTAAATTGGGCAGTACCGTGGTGGCTTTATTCCCTAAAGAGAGCATTCATTTTGCAGAAAATCT
TCAAGCGGGCTCAGTAACACGCTTAGGTGAGCTATTTGCAAGTAAAGTTGAACATAAATAA

Upstream 100 bases:

>100_bases
TGCGCGCCATCGTCCACCCAACACCTATGATTAACAACGCCTTTACGGTGTACAAAATTTAGGTACAATTTTCGGCATAA
ATTAACAAAATGAGAAGAAC

Downstream 100 bases:

>100_bases
AGGGTTGATAGCGCAATGACAGAATTATCCGCAGCACAATACTTAAAAAAAATCTTACTTGCTCCTGTTTATGAAGCAGC
CATAGAAACACCCTTACAAC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MIDQLKIIGQYLLPKKLLSRLLGKLAAAEAGKLTTFLIKKFINKFNVDMSEAKYSDPEYFKTFNDFFTRELKPEARQIIA
GEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGGRDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFI
PGDLFSVNPLTAQNVPNLFARNERAVAIFSTAVGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKG
AEMGRFKLGSTVVALFPKESIHFAENLQAGSVTRLGELFASKVEHK

Sequences:

>Translated_286_residues
MIDQLKIIGQYLLPKKLLSRLLGKLAAAEAGKLTTFLIKKFINKFNVDMSEAKYSDPEYFKTFNDFFTRELKPEARQIIA
GEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGGRDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFI
PGDLFSVNPLTAQNVPNLFARNERAVAIFSTAVGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKG
AEMGRFKLGSTVVALFPKESIHFAENLQAGSVTRLGELFASKVEHK
>Mature_286_residues
MIDQLKIIGQYLLPKKLLSRLLGKLAAAEAGKLTTFLIKKFINKFNVDMSEAKYSDPEYFKTFNDFFTRELKPEARQIIA
GEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGGRDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFI
PGDLFSVNPLTAQNVPNLFARNERAVAIFSTAVGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKG
AEMGRFKLGSTVVALFPKESIHFAENLQAGSVTRLGELFASKVEHK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=299, Percent_Identity=32.4414715719064, Blast_Score=134, Evalue=9e-32,
Organism=Escherichia coli, GI1790604, Length=288, Percent_Identity=49.6527777777778, Blast_Score=289, Evalue=1e-79,
Organism=Caenorhabditis elegans, GI71980840, Length=279, Percent_Identity=32.9749103942652, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71980843, Length=279, Percent_Identity=32.9749103942652, Blast_Score=110, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=246, Percent_Identity=29.6747967479675, Blast_Score=105, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=167, Percent_Identity=37.125748502994, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24649526, Length=300, Percent_Identity=31.6666666666667, Blast_Score=121, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24649528, Length=300, Percent_Identity=31.6666666666667, Blast_Score=121, Evalue=6e-28,
Organism=Drosophila melanogaster, GI24649524, Length=300, Percent_Identity=31.6666666666667, Blast_Score=121, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PSYIN (A1SZV9)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944623.1
- STRING:   A1SZV9
- GeneID:   4625716
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3337
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   A1SZV9
- BioCyc:   PING357804:PING_3337-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31742; Mature: 31742

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDQLKIIGQYLLPKKLLSRLLGKLAAAEAGKLTTFLIKKFINKFNVDMSEAKYSDPEYF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
KTFNDFFTRELKPEARQIIAGEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGG
HHHHHHHHHCCCHHHHHEECCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCHHHHHCCC
RDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFIPGDLFSVNPLTAQNVPNLFA
CCCCCCCHHCCHHEEEEECCCCCCEEECCCCCCCEEEEEECCCCEECCCCCCCCCCHHHH
RNERAVAIFSTAVGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCEEHHCC
AEMGRFKLGSTVVALFPKESIHFAENLQAGSVTRLGELFASKVEHK
CCCCCEECCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDQLKIIGQYLLPKKLLSRLLGKLAAAEAGKLTTFLIKKFINKFNVDMSEAKYSDPEYF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHH
KTFNDFFTRELKPEARQIIAGEDNLAHPVDGAVSQMGDIKEGRLFQAKGHDFSLRELLGG
HHHHHHHHHCCCHHHHHEECCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCHHHHHCCC
RDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFIPGDLFSVNPLTAQNVPNLFA
CCCCCCCHHCCHHEEEEECCCCCCEEECCCCCCCEEEEEECCCCEECCCCCCCCCCHHHH
RNERAVAIFSTAVGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCEEHHCC
AEMGRFKLGSTVVALFPKESIHFAENLQAGSVTRLGELFASKVEHK
CCCCCEECCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA