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The map label for this gene is algQ [H]

Identifier: 119946830

GI number: 119946830

Start: 3979602

End: 3980075

Strand: Direct

Name: algQ [H]

Synonym: Ping_3224

Alternate gene names: 119946830

Gene position: 3979602-3980075 (Clockwise)

Preceding gene: 119946824

Following gene: 119946833

Centisome position: 87.28

GC content: 40.93

Gene sequence:

>474_bases
ATGCTAACCAAATTAGAACGCGCAAAAGAAGAATGGGGTGGCAGACTTTCAGTTATTGATAATTGGCTCGAAGAACGTCA
GACACTAGTGGTTGTATATTGCAAACTGGCAGGATTACCACCTTACCAAGAGACAAATCACAGCTTACCCGCACAAGAAA
AAATTACTCATTTTTGCCAACTTCTGCTTGACTATGCATCCACCGGACACTTCGAAATCTACGAGCAGATAATTACACAA
TGCAAATTAGATGGGGAAAACAATTTAAAAATTGCTCAGGAGTTATATTCACGCATTACGACAACCACAGATGCAGCGTT
GAGTTTTAACGATAAGTATGCAGAATCAGCCAATGAGCAAGCCTTAGTTGATTTTGACCGCGATCTTTCTAACTTAGGTC
AGCTAATGGAAGAGCGTTTTGAACGTGAAGACCAGCTGCTTGAAGTTGTACACCTGCACCATACATTGGCATAA

Upstream 100 bases:

>100_bases
CAGTAAGATTATCTACAAATTCAAATTCATGTTGACGCTAAGTGCAATTTTATCTATTTTTATTTAACAGTTCCAGTCTA
CTAATAACGAGGTGCACGAT

Downstream 100 bases:

>100_bases
AAAATAATATATTTATGTGTTTTTAGTCAGAGTGTTAAAAATAGGCAGCGAAATGACACTGCCTGAGTCAAATACACCGG
CATCAATAATAATAGCGCTA

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: Alginate regulatory protein AlgR2 [H]

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQLLLDYASTGHFEIYEQIITQ
CKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTLA

Sequences:

>Translated_157_residues
MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQLLLDYASTGHFEIYEQIITQ
CKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTLA
>Mature_157_residues
MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQLLLDYASTGHFEIYEQIITQ
CKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTLA

Specific function: The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e., under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, h

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=151, Percent_Identity=33.7748344370861, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18157; Mature: 18157

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQ
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LLLDYASTGHFEIYEQIITQCKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQ
HHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCC
ALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQ
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LLLDYASTGHFEIYEQIITQCKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQ
HHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCC
ALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514124; 2110144; 10984043 [H]