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The map label for this gene is acoR [H]

Identifier: 119946782

GI number: 119946782

Start: 3908145

End: 3910034

Strand: Direct

Name: acoR [H]

Synonym: Ping_3175

Alternate gene names: 119946782

Gene position: 3908145-3910034 (Clockwise)

Preceding gene: 119946775

Following gene: 119946783

Centisome position: 85.71

GC content: 43.7

Gene sequence:

>1890_bases
ATGCCCACAAAACCAGTACATCATAGGACACATGAGACGATGATAGTGCAGTCTTGGCAACGCTGTCGAGAGTCCGGACT
GAACCATAATTCAACGCCAAATATTGACCGCCTAGCTGGTGGCTCGCTGTCTTCATTGCTTGATGAACATCATAGCCTTC
TGACAACAACTCATAATGAAGTACTGCCCTATTATGAAAACTTACTGCTTAACAGTAAGAGCCAGGTAATGCTCGCTGAC
CATCAGGGTTACGTGCTTCAAAATTGGGGCGATCAGCGCTTTAAGCGCGATAATCAAGAGATATTCACGCCCGGTAGTGG
TTGGCAGGAATCCACATTAGGAACAAATGCAATTGGTACTGCGCTGAAAACCGGCAACATAGTGCAGATTGAGCGGGATG
AACATTTTTTAATTTCCAACCGTTTTATGACCGGATCAGCCGCCCCTATTTTTGGTATAGACCGCGAGATGCTTGGGGTA
ATCGATATATCAACTGATACTTACCTGCCTGAATCACATACCTTAGGGCTAGTAAAAATAATGTCGCAAGCAGTAGAGAA
TCAACTGATTACCTCCCACTTTAAGGGCGAATATTTTATACTGCGCTTTAATACCAGCATCGAGAATATTGATAGTCAGT
GGTCAGGCTTAATCGTATTTGATGAAAATGGTTTGGTTATTTCAGCGAATCACCGGGCAGAAATAATGCTCGGCTGTGAT
TTAAAACTCGTGAATATCTCTCAGCTATTTATGATTAACGTCAGTCAGTTAGTCAACCAACCCGAAGGTTTTCAGGTGCC
CTTAGTGACCACGCAACAATTCAGAGTACATGGGATAGTGCATAAGCCCGTACAGGCAAAACCCCGAGCATTGGATTTTA
GAGCCGAGATTAAGCCCGAGAAATCAGCCAGGCATGTATCAGATCAACACAGGTTTCAGTTAGATGAACTTAACCTTGGT
GATCCCGTGATGGAGAAAGCTGTCGCTCAAAGCAAACGTATTATTGACAAAAATATTCCTATTTTAATCTCCGGGGAAAC
GGGTGTCGGCAAAGAAGTATTTGTTAAAGCGATGCATTATTCAAGCCTGCGCAGCAAACAGAATTTGATTACCGTAAACT
GTGCCGCTATTCCACAGGAGTTAGTTGAATCGGAACTTTTTGGTTATGAAAAAGGCGCCTTTACCGGCTCAAGCAGTAAA
GGTTATATAGGACTAATCCGCAAAGCCGATAAAGGGACATTATTTTTAGATGAGATTGGTGATATGCCACTCAATGTTCA
GGCGCGTTTATTACGGGTATTGCAGGAGCGCAGGGTGAACCCTCTGGGCAGCACCGAGTCTTATCCCGTCGATTTCAAGC
TTGTTTCCGCGACCAACTGCAATCTTAAAGAGTCCGTCGCAGCAGGTACCTTCCGTCAGGATTTATATTACCGGGTAAGT
GGTTTAAATATAGAATTACCCGCACTCCGCCATCGCCGCGACCGCCAGAAATTGATCCAGTTTCTCCTGAAATATTACGC
AGAAAATAAACAGCATACCGAGATCACAGAGCGTGCCATGGATAGCTTTAACCGGCACCCCTGGCCGGGTAACATTCGTC
AATTGGTCAGTGTTATTCAAATTGCGCAGGCAATGTCAGATAATGAACCGATTGACTTTGAGCATCTCCCCGATGATTTT
TTTACTGATATGGAAGCAAGTGAAAATCACGGTGAGACTTTAATTGTCGGACAGGAAAACAAACCATTAACAGCTGCAAC
GGATTCGAACACCAACAACATAATAGCTTTATATCAGTCGCTTAATTGTAATATATCAAAAACTGCAGCACAGTTATCCG
TGAGCAGAAATACCGTCTATAAACGCCTGCGTGAGAGTGGTTTTAAATAA

Upstream 100 bases:

>100_bases
TTGATGCGCGTTTGTAATCATAATAGGCTCTTTTTCGAACATCAAGACACAAAGCTTACAATGATTTAACAGCAACAATG
AAGAATAGGGGAGCAATAAA

Downstream 100 bases:

>100_bases
TGTAAAATCAAATCATCATGACCTTAAACTGCCAGCAAGTTGCTTTACCCCAACTTAGCTCCCTTATTTACGCAACACCA
CTATCGTTTAATCAATCGCT

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 628

Protein sequence:

>629_residues
MPTKPVHHRTHETMIVQSWQRCRESGLNHNSTPNIDRLAGGSLSSLLDEHHSLLTTTHNEVLPYYENLLLNSKSQVMLAD
HQGYVLQNWGDQRFKRDNQEIFTPGSGWQESTLGTNAIGTALKTGNIVQIERDEHFLISNRFMTGSAAPIFGIDREMLGV
IDISTDTYLPESHTLGLVKIMSQAVENQLITSHFKGEYFILRFNTSIENIDSQWSGLIVFDENGLVISANHRAEIMLGCD
LKLVNISQLFMINVSQLVNQPEGFQVPLVTTQQFRVHGIVHKPVQAKPRALDFRAEIKPEKSARHVSDQHRFQLDELNLG
DPVMEKAVAQSKRIIDKNIPILISGETGVGKEVFVKAMHYSSLRSKQNLITVNCAAIPQELVESELFGYEKGAFTGSSSK
GYIGLIRKADKGTLFLDEIGDMPLNVQARLLRVLQERRVNPLGSTESYPVDFKLVSATNCNLKESVAAGTFRQDLYYRVS
GLNIELPALRHRRDRQKLIQFLLKYYAENKQHTEITERAMDSFNRHPWPGNIRQLVSVIQIAQAMSDNEPIDFEHLPDDF
FTDMEASENHGETLIVGQENKPLTAATDSNTNNIIALYQSLNCNISKTAAQLSVSRNTVYKRLRESGFK

Sequences:

>Translated_629_residues
MPTKPVHHRTHETMIVQSWQRCRESGLNHNSTPNIDRLAGGSLSSLLDEHHSLLTTTHNEVLPYYENLLLNSKSQVMLAD
HQGYVLQNWGDQRFKRDNQEIFTPGSGWQESTLGTNAIGTALKTGNIVQIERDEHFLISNRFMTGSAAPIFGIDREMLGV
IDISTDTYLPESHTLGLVKIMSQAVENQLITSHFKGEYFILRFNTSIENIDSQWSGLIVFDENGLVISANHRAEIMLGCD
LKLVNISQLFMINVSQLVNQPEGFQVPLVTTQQFRVHGIVHKPVQAKPRALDFRAEIKPEKSARHVSDQHRFQLDELNLG
DPVMEKAVAQSKRIIDKNIPILISGETGVGKEVFVKAMHYSSLRSKQNLITVNCAAIPQELVESELFGYEKGAFTGSSSK
GYIGLIRKADKGTLFLDEIGDMPLNVQARLLRVLQERRVNPLGSTESYPVDFKLVSATNCNLKESVAAGTFRQDLYYRVS
GLNIELPALRHRRDRQKLIQFLLKYYAENKQHTEITERAMDSFNRHPWPGNIRQLVSVIQIAQAMSDNEPIDFEHLPDDF
FTDMEASENHGETLIVGQENKPLTAATDSNTNNIIALYQSLNCNISKTAAQLSVSRNTVYKRLRESGFK
>Mature_628_residues
PTKPVHHRTHETMIVQSWQRCRESGLNHNSTPNIDRLAGGSLSSLLDEHHSLLTTTHNEVLPYYENLLLNSKSQVMLADH
QGYVLQNWGDQRFKRDNQEIFTPGSGWQESTLGTNAIGTALKTGNIVQIERDEHFLISNRFMTGSAAPIFGIDREMLGVI
DISTDTYLPESHTLGLVKIMSQAVENQLITSHFKGEYFILRFNTSIENIDSQWSGLIVFDENGLVISANHRAEIMLGCDL
KLVNISQLFMINVSQLVNQPEGFQVPLVTTQQFRVHGIVHKPVQAKPRALDFRAEIKPEKSARHVSDQHRFQLDELNLGD
PVMEKAVAQSKRIIDKNIPILISGETGVGKEVFVKAMHYSSLRSKQNLITVNCAAIPQELVESELFGYEKGAFTGSSSKG
YIGLIRKADKGTLFLDEIGDMPLNVQARLLRVLQERRVNPLGSTESYPVDFKLVSATNCNLKESVAAGTFRQDLYYRVSG
LNIELPALRHRRDRQKLIQFLLKYYAENKQHTEITERAMDSFNRHPWPGNIRQLVSVIQIAQAMSDNEPIDFEHLPDDFF
TDMEASENHGETLIVGQENKPLTAATDSNTNNIIALYQSLNCNISKTAAQLSVSRNTVYKRLRESGFK

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=346, Percent_Identity=38.728323699422, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1789233, Length=264, Percent_Identity=40.530303030303, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1790437, Length=305, Percent_Identity=38.3606557377049, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI1788905, Length=233, Percent_Identity=42.4892703862661, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI87082117, Length=240, Percent_Identity=42.5, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1790299, Length=358, Percent_Identity=34.0782122905028, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1789087, Length=309, Percent_Identity=36.2459546925566, Blast_Score=182, Evalue=7e-47,
Organism=Escherichia coli, GI1786524, Length=338, Percent_Identity=34.0236686390533, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87082152, Length=231, Percent_Identity=39.3939393939394, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787583, Length=346, Percent_Identity=31.5028901734104, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081872, Length=228, Percent_Identity=39.4736842105263, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI87081858, Length=635, Percent_Identity=23.7795275590551, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1789828, Length=266, Percent_Identity=34.2105263157895, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 70938; Mature: 70807

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTKPVHHRTHETMIVQSWQRCRESGLNHNSTPNIDRLAGGSLSSLLDEHHSLLTTTHNE
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCH
VLPYYENLLLNSKSQVMLADHQGYVLQNWGDQRFKRDNQEIFTPGSGWQESTLGTNAIGT
HHHHHHHHHCCCCCCEEEECCCCEEEECCCCHHHHCCCCEEECCCCCCCCCCCCCHHHHH
ALKTGNIVQIERDEHFLISNRFMTGSAAPIFGIDREMLGVIDISTDTYLPESHTLGLVKI
HCCCCCEEEEECCCEEEEECEEECCCCCCEECCCHHHEEEEEECCCCCCCCCCCHHHHHH
MSQAVENQLITSHFKGEYFILRFNTSIENIDSQWSGLIVFDENGLVISANHRAEIMLGCD
HHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEECC
LKLVNISQLFMINVSQLVNQPEGFQVPLVTTQQFRVHGIVHKPVQAKPRALDFRAEIKPE
EEEEEHHHHEEEEHHHHCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEECEEECCCCC
KSARHVSDQHRFQLDELNLGDPVMEKAVAQSKRIIDKNIPILISGETGVGKEVFVKAMHY
HHHHHCCHHHCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
SSLRSKQNLITVNCAAIPQELVESELFGYEKGAFTGSSSKGYIGLIRKADKGTLFLDEIG
HHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHC
DMPLNVQARLLRVLQERRVNPLGSTESYPVDFKLVSATNCNLKESVAAGTFRQDLYYRVS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEEEE
GLNIELPALRHRRDRQKLIQFLLKYYAENKQHTEITERAMDSFNRHPWPGNIRQLVSVIQ
CCEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IAQAMSDNEPIDFEHLPDDFFTDMEASENHGETLIVGQENKPLTAATDSNTNNIIALYQS
HHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEE
LNCNISKTAAQLSVSRNTVYKRLRESGFK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PTKPVHHRTHETMIVQSWQRCRESGLNHNSTPNIDRLAGGSLSSLLDEHHSLLTTTHNE
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCH
VLPYYENLLLNSKSQVMLADHQGYVLQNWGDQRFKRDNQEIFTPGSGWQESTLGTNAIGT
HHHHHHHHHCCCCCCEEEECCCCEEEECCCCHHHHCCCCEEECCCCCCCCCCCCCHHHHH
ALKTGNIVQIERDEHFLISNRFMTGSAAPIFGIDREMLGVIDISTDTYLPESHTLGLVKI
HCCCCCEEEEECCCEEEEECEEECCCCCCEECCCHHHEEEEEECCCCCCCCCCCHHHHHH
MSQAVENQLITSHFKGEYFILRFNTSIENIDSQWSGLIVFDENGLVISANHRAEIMLGCD
HHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEECC
LKLVNISQLFMINVSQLVNQPEGFQVPLVTTQQFRVHGIVHKPVQAKPRALDFRAEIKPE
EEEEEHHHHEEEEHHHHCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEECEEECCCCC
KSARHVSDQHRFQLDELNLGDPVMEKAVAQSKRIIDKNIPILISGETGVGKEVFVKAMHY
HHHHHCCHHHCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHH
SSLRSKQNLITVNCAAIPQELVESELFGYEKGAFTGSSSKGYIGLIRKADKGTLFLDEIG
HHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHC
DMPLNVQARLLRVLQERRVNPLGSTESYPVDFKLVSATNCNLKESVAAGTFRQDLYYRVS
CCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHEEEEE
GLNIELPALRHRRDRQKLIQFLLKYYAENKQHTEITERAMDSFNRHPWPGNIRQLVSVIQ
CCEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
IAQAMSDNEPIDFEHLPDDFFTDMEASENHGETLIVGQENKPLTAATDSNTNNIIALYQS
HHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEEE
LNCNISKTAAQLSVSRNTVYKRLRESGFK
CCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]