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The map label for this gene is yddU [C]

Identifier: 119946707

GI number: 119946707

Start: 3794699

End: 3796882

Strand: Direct

Name: yddU [C]

Synonym: Ping_3089

Alternate gene names: 119946707

Gene position: 3794699-3796882 (Clockwise)

Preceding gene: 119946704

Following gene: 119946718

Centisome position: 83.22

GC content: 47.53

Gene sequence:

>2184_bases
ATGATAAATATTCAACATTTAATAACCGGTATTACGGGCAGAATCACATCGCGTTTTTTGCTTTTCGCGGCACTGTCGAT
CCTAATTATTGCCGCTATTGGCTATATCAAGATCTACCAAGTTACCGCGAACAACTCAGAAATCCGAATTGGACGCGCCG
CGCATGCCGCAGCAGTCATCTTGTCCGAACGCTTTGCGGAGGAATTTACTGCGGTATTCGATGACCAGGGTAATGTGAAG
GCAATCCAGCTCAAAGGCGATACCGCTGCAACATCCCTGTCTTTTCGCGACGAGTATGATGTCATTCTAAAGGACATAGG
GTCGACTAATCACGGTGCGGCTAACCTTTTTAAGTTCAACTCTCAAACCAAGGCGTTTGATCGTTTTGTCACGACCTTCC
GGAAACCTGATGGCTCCATGCCACCACCGATGTCTATCAGTGTCGGTCACCCCGCCTATAAAAATATTATCAATGGTCGG
ATCCATCGCGGGCAAGTGCCCGTTATGGGGCGTTTAAGATTAGCAGAGCTGATGCCGATCATAGCCTTGGACAAATCGGT
GAAAGGCGTGCTTGCCGTTGACGTGGGCTGGGTTGATGACTTGATCGCCGCGCGGGATGAGTTGCGCAACCAAAGCATAC
TGGTTGCCGGCATAATCCTTATTTTGGAAGCCCTTCTCGGCGCCGCCTATATCAGTCACGCACTCAGGCCAATTCGGGTT
TTGGCAAAATATGCTGAGGATATGGCCTCTGAAAAAGTCTTGGGAAGCGTACCCTTCCTCGGCCAAAGCGACGAGGTCGG
CGCACTGTCCGAAGGCCTTAATCGTGTGGCTGGCCTGCAGAGTAAACTCGCTCATCTGGCCTATACAGACGAGCTCACAG
GTCTTGGTAATCGCAGCCGTTACCTTGCTGATCTTCAGGTGGCTTTGAGGGAGAGCCAATCGGGCAACGGATCTTGGGTA
TTGTTACACCTCAGCATCGACAAATTTAGCCACCTCAATGATGCCTATGGGCAGGAAATGGGCGATAAGATTCTCAAAAG
GCTTGGGTCTAGAATTCAGCAGGTTGCAGGAAATCAGGCAAAGGTAGCGCGTCCCAGCGCAGCTGATTTTTCTATCATTA
TCGATAATCGTCTGGCAACTGACAAAATTACAGTGCTCGCCCAAAACCTTATTGAGACCATGCGCAAAGGGTTCCAGACT
CAGGTTGGCAAAATTTTCATAACCGGTTCAATAGGTGTAATCGATGTGCTCAAAGATTTTGATGAGCCTGACGAGGCACA
TCTCAATGGGAATTTAGCGCTTCGCAAAGCCCAGAGAGCAGGAGGCGATCAATATGCGATTTTCTCCTCAGAATTAAACG
ACGAGCACCAAGAACGGGTGACGTTGATAAAAATACTTGAGATGGCGATCGAAAAAAGGGAGATCGAGATCCATTTCCAG
CCACAGATCATTCTGTCATCTAATAAATTAGCTGGGTTAGAAGCCCTCGCCCGCTGGAACCACCCAAGCTTGGGTCAGAT
TCCACCCGCTAAATTTATTCCTATCGCCGAAGACAGCGGGCAGATTGTCAAGCTTGGCACCCTGATCATTGATATGGCAT
GCCAACAAGCGGCGCAATGGCGTAAGGCAAACTTCGACTTTAAACATATTGCAGTCAATGTCTCACCCATCCAGTTATGG
CAGGACAATTTTATCGACGTTTTGAGTGCTGCATTAGAAAAATACAAACTGCCGGCTAATTGTATCTGCATCGAAATTAC
AGAAAGTGTGTTTATCGACAATACCAAACACAACACGCTACGGGTTCTAGAGCTTATTCGATCACTTGGTGTGATGCTAT
CACTCGATGATTTCGGCTCGGGCTATTCATCGCTAAGCTATCTCAACAACATGCCCTTCAATCAGCTGAAAATTGACAGT
AGCTTCGTCACCAATATTGATATAGATAGCCGCAAGCAGAAGGTCATGCGGGGTATTCTTTCACTCACGACTGAGCTCGA
CTTTAAAGTTATTATTGAAGGAACAGAAACTATTGAGGAAATCATGATGGTTCAAGAAATGGGATGTGATGTAGTTCAGG
GCTACTATTATGCCAAGCCTGCACCTGCTGCTCTCATTCCTGGCATCGTGAACCAGGTTTTCAGGTCAGTGTTAGCAATT
GACGCTAAGCTGTCGAAAGACTGA

Upstream 100 bases:

>100_bases
ATCTCTTTCCACAGAAAACCCGATTGGCTTACAAGCCCTTGGCCGCTTTCACTGCTTAATGAAGCTATCTTGTATTCAGT
GTTTTTTGGAGTGAAGTAAT

Downstream 100 bases:

>100_bases
TCTGTTGCTTAACCCGTTTTCGAATATCGTCTCTCAACGACTGATCCCGTTTGAATGCTAATGCATCGTTGGACTTTGAT
CCATCTGGATGATGATTGTC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MINIQHLITGITGRITSRFLLFAALSILIIAAIGYIKIYQVTANNSEIRIGRAAHAAAVILSERFAEEFTAVFDDQGNVK
AIQLKGDTAATSLSFRDEYDVILKDIGSTNHGAANLFKFNSQTKAFDRFVTTFRKPDGSMPPPMSISVGHPAYKNIINGR
IHRGQVPVMGRLRLAELMPIIALDKSVKGVLAVDVGWVDDLIAARDELRNQSILVAGIILILEALLGAAYISHALRPIRV
LAKYAEDMASEKVLGSVPFLGQSDEVGALSEGLNRVAGLQSKLAHLAYTDELTGLGNRSRYLADLQVALRESQSGNGSWV
LLHLSIDKFSHLNDAYGQEMGDKILKRLGSRIQQVAGNQAKVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKGFQT
QVGKIFITGSIGVIDVLKDFDEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQERVTLIKILEMAIEKREIEIHFQ
PQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAEDSGQIVKLGTLIIDMACQQAAQWRKANFDFKHIAVNVSPIQLW
QDNFIDVLSAALEKYKLPANCICIEITESVFIDNTKHNTLRVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQLKIDS
SFVTNIDIDSRKQKVMRGILSLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYYYAKPAPAALIPGIVNQVFRSVLAI
DAKLSKD

Sequences:

>Translated_727_residues
MINIQHLITGITGRITSRFLLFAALSILIIAAIGYIKIYQVTANNSEIRIGRAAHAAAVILSERFAEEFTAVFDDQGNVK
AIQLKGDTAATSLSFRDEYDVILKDIGSTNHGAANLFKFNSQTKAFDRFVTTFRKPDGSMPPPMSISVGHPAYKNIINGR
IHRGQVPVMGRLRLAELMPIIALDKSVKGVLAVDVGWVDDLIAARDELRNQSILVAGIILILEALLGAAYISHALRPIRV
LAKYAEDMASEKVLGSVPFLGQSDEVGALSEGLNRVAGLQSKLAHLAYTDELTGLGNRSRYLADLQVALRESQSGNGSWV
LLHLSIDKFSHLNDAYGQEMGDKILKRLGSRIQQVAGNQAKVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKGFQT
QVGKIFITGSIGVIDVLKDFDEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQERVTLIKILEMAIEKREIEIHFQ
PQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAEDSGQIVKLGTLIIDMACQQAAQWRKANFDFKHIAVNVSPIQLW
QDNFIDVLSAALEKYKLPANCICIEITESVFIDNTKHNTLRVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQLKIDS
SFVTNIDIDSRKQKVMRGILSLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYYYAKPAPAALIPGIVNQVFRSVLAI
DAKLSKD
>Mature_727_residues
MINIQHLITGITGRITSRFLLFAALSILIIAAIGYIKIYQVTANNSEIRIGRAAHAAAVILSERFAEEFTAVFDDQGNVK
AIQLKGDTAATSLSFRDEYDVILKDIGSTNHGAANLFKFNSQTKAFDRFVTTFRKPDGSMPPPMSISVGHPAYKNIINGR
IHRGQVPVMGRLRLAELMPIIALDKSVKGVLAVDVGWVDDLIAARDELRNQSILVAGIILILEALLGAAYISHALRPIRV
LAKYAEDMASEKVLGSVPFLGQSDEVGALSEGLNRVAGLQSKLAHLAYTDELTGLGNRSRYLADLQVALRESQSGNGSWV
LLHLSIDKFSHLNDAYGQEMGDKILKRLGSRIQQVAGNQAKVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKGFQT
QVGKIFITGSIGVIDVLKDFDEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQERVTLIKILEMAIEKREIEIHFQ
PQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAEDSGQIVKLGTLIIDMACQQAAQWRKANFDFKHIAVNVSPIQLW
QDNFIDVLSAALEKYKLPANCICIEITESVFIDNTKHNTLRVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQLKIDS
SFVTNIDIDSRKQKVMRGILSLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYYYAKPAPAALIPGIVNQVFRSVLAI
DAKLSKD

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=462, Percent_Identity=30.5194805194805, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=31.3679245283019, Blast_Score=214, Evalue=2e-56,
Organism=Escherichia coli, GI226510982, Length=482, Percent_Identity=24.6887966804979, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=32.0675105485232, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1787055, Length=251, Percent_Identity=34.2629482071713, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=31.0924369747899, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=32.4894514767932, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=30.5220883534137, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=28.968253968254, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=32.7935222672065, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=25.6410256410256, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=21.2189616252822, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787410, Length=155, Percent_Identity=27.741935483871, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 80048; Mature: 80048

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINIQHLITGITGRITSRFLLFAALSILIIAAIGYIKIYQVTANNSEIRIGRAAHAAAVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEHHHHHHHHH
LSERFAEEFTAVFDDQGNVKAIQLKGDTAATSLSFRDEYDVILKDIGSTNHGAANLFKFN
HHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEEC
SQTKAFDRFVTTFRKPDGSMPPPMSISVGHPAYKNIINGRIHRGQVPVMGRLRLAELMPI
CHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHH
IALDKSVKGVLAVDVGWVDDLIAARDELRNQSILVAGIILILEALLGAAYISHALRPIRV
HHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKYAEDMASEKVLGSVPFLGQSDEVGALSEGLNRVAGLQSKLAHLAYTDELTGLGNRSR
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YLADLQVALRESQSGNGSWVLLHLSIDKFSHLNDAYGQEMGDKILKRLGSRIQQVAGNQA
HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKGFQTQVGKIFITGSIGVIDVLKDF
EECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
DEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQERVTLIKILEMAIEKREIEIHFQ
CCCCHHCCCCCCEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC
PQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAEDSGQIVKLGTLIIDMACQQAAQW
CEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHH
RKANFDFKHIAVNVSPIQLWQDNFIDVLSAALEKYKLPANCICIEITESVFIDNTKHNTL
HHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCHHH
RVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQLKIDSSFVTNIDIDSRKQKVMRGIL
HHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHH
SLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYYYAKPAPAALIPGIVNQVFRSVLAI
HHHHCCCEEEEEECHHHHHHHHHHHHHCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
DAKLSKD
HHHCCCC
>Mature Secondary Structure
MINIQHLITGITGRITSRFLLFAALSILIIAAIGYIKIYQVTANNSEIRIGRAAHAAAVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEHHHHHHHHH
LSERFAEEFTAVFDDQGNVKAIQLKGDTAATSLSFRDEYDVILKDIGSTNHGAANLFKFN
HHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHCCCCCCCCCCEEEEC
SQTKAFDRFVTTFRKPDGSMPPPMSISVGHPAYKNIINGRIHRGQVPVMGRLRLAELMPI
CHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHCCCEECCCCCCHHHHHHHHHHHH
IALDKSVKGVLAVDVGWVDDLIAARDELRNQSILVAGIILILEALLGAAYISHALRPIRV
HHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAKYAEDMASEKVLGSVPFLGQSDEVGALSEGLNRVAGLQSKLAHLAYTDELTGLGNRSR
HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
YLADLQVALRESQSGNGSWVLLHLSIDKFSHLNDAYGQEMGDKILKRLGSRIQQVAGNQA
HHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
KVARPSAADFSIIIDNRLATDKITVLAQNLIETMRKGFQTQVGKIFITGSIGVIDVLKDF
EECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCC
DEPDEAHLNGNLALRKAQRAGGDQYAIFSSELNDEHQERVTLIKILEMAIEKREIEIHFQ
CCCCHHCCCCCCEEEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC
PQIILSSNKLAGLEALARWNHPSLGQIPPAKFIPIAEDSGQIVKLGTLIIDMACQQAAQW
CEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHH
RKANFDFKHIAVNVSPIQLWQDNFIDVLSAALEKYKLPANCICIEITESVFIDNTKHNTL
HHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCHHH
RVLELIRSLGVMLSLDDFGSGYSSLSYLNNMPFNQLKIDSSFVTNIDIDSRKQKVMRGIL
HHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCEEEECCCEEEECCCCHHHHHHHHHHH
SLTTELDFKVIIEGTETIEEIMMVQEMGCDVVQGYYYAKPAPAALIPGIVNQVFRSVLAI
HHHHCCCEEEEEECHHHHHHHHHHHHHCCHHHCCEEECCCCCHHHHHHHHHHHHHHHHHH
DAKLSKD
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]