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The map label for this gene is ccmF [H]

Identifier: 119946640

GI number: 119946640

Start: 3718293

End: 3720254

Strand: Reverse

Name: ccmF [H]

Synonym: Ping_3019

Alternate gene names: 119946640

Gene position: 3720254-3718293 (Counterclockwise)

Preceding gene: 119946641

Following gene: 119946639

Centisome position: 81.59

GC content: 42.81

Gene sequence:

>1962_bases
ATGTTACCTGAAATTGGTCAAGTTGTGCTGGCAATAGCCTGCATGTTTTCATTATTACAAGTCGTTTATCCGCTCTATGG
GATTTATGCTCACCAGCAAAGTGCCATTGAATCTGCTAAGATTTTAACTGTTTTACAGTTTGTTTTTGTTGCTTTGTCAT
TTATTATCTTAGCTTATTTGTTTCTGGTTAATGATTTTACGGTGGCTTATATTGCTACCAATTCTAACTCAGCGATGCCC
TGGTATTACCGCTTGTCTGCCGTCTGGGGAGCACATGAAGGATCGTTACTTTTATGGGTGCTTCTATTGTCAATGTGGAG
TATGGCTGTTGCGCTGATGAGTAAACGCTTACCTGTTGAGTCCGTTGCCCGAGTACTCGCTGTATTAGGTTTATTATCAT
TGGGTTTTTACTTATTTGTTTTATTAACCTCGAACCCTTTTGATCGCACTCTCCCCTATTTCCCCGTTGATGGCCGGGAT
CTTAACCCGCTACTGCAGGATATTGGCCTTATTTTTCACCCACCTATGCTGTATATGGGTTATGTCGGTTTTTCAGTTGC
TTTTGCTTTTGCTATTGCGGCACTAATGGAAGGGCGCCTGGACAGTGCCTGGGCTAAATGGTCCCGTCCTTGGACAATAG
CTGCCTGGACCTTCTTAACATTAGGTATCGCATTGGGAAGCTGGTGGGCTTATTACGAATTGGGTTGGGGTGGATGGTGG
TTTTGGGATCCCGTTGAAAATGCTTCTTTTATGCCCTGGCTTGCCGGTACGGCTTTAATCCATTCGTTAGCGGTGAGTGA
AAAACGGGGTGTTTTTAAATCCTGGACAGTGCTACTTGCGATCAGCGCATTTTCATTAAGCTTGCTGGGCACTTTTTTGG
TGCGCTCGGGTGTTTTGGTGTCGGTGCACGCCTTTGCAAGTGACCCTACTCGTGGTCTATTTATATTAACCTATTTGATT
TTAGTGATTGGTGGTTCATTATTACTTTACGCAGTACAGGCTTCGAAAGTAAAAAGTCGCGGTCGTTATAGTATTATCTC
CCGTGAAACTATGCTGCTCAGTAATAATATTTTATTAATCGCGGCGTTAATTGTGGTTTTATTAGGGACACTATTACCGC
TTGTCCATAAAGAAATGGGTTTAGGCAGTATTTCGATTGGTGAACCCTTCTTTAACCGTATATTTACTGTTTTGATTGTA
CCCTTTGCACTCTTTTTAGGCGTGGGCTCTTTAGTGCGCTGGCAACGTCAGAATCTAACCGATTTGTTTAAACCAATGGT
TATTCTATTAGTCGTTAGTACTTTGTTAACGCTTGTTTTTCTAGGAACTCTTGCCTCCCATTTTACCTGGCTTGCTGTAT
TAGGCATCTTTCTGGCTATGTGGATATTGACAGGAACTTGTGTGGAGATTTACCTGCGTTCGACACACCGTTTTAGCCTG
TGGACAGGTATGCGTAAATTAGGTAACAGTCATTGGGCAATGACTTTGGGTCATGCCGGATTCGCAATTATGTTAATCGG
TATTACGATGACCCAAAATTTCTCTATTGAGCGTGATGTTAAATTAAGCGTAGGAGAAAGTGTTCGCTTTGAGCATTACG
ATTTTCATTTTGATGCAGTCAATGACCTGCAGGGCAAAAACTACGGCGGCATTGTCGGGAAATTTACCGTTAAATATGAT
CAAAAAACGGTCGCCGTTATGGAGCCTGAAAAAAGAATTTATAATGTGCAAAGAACGGCGATGACCGAAGCCGCTATTGA
TTCAGGTTTTACCCGTGATTTGTATATCGCAATGGGTGAAGTATTACCGGACGGGGCTTGGTCTGTACGTGTTTATTATA
AATCTTTTATACGTTGGATCTGGTTTGGTCCGATGATGATGGCATTGGCGGGTGTTTTGGTGATCTTTGATCGCCGCTAC
CGGGTCAAAAAAGTGCCCGAATCAGCAGCGGAGGTTATCTGA

Upstream 100 bases:

>100_bases
AACATGACGAAGAGTATATGCCCCCGGAAGTTTCTGAGGCACTGGTTGGCATGGATAATTTCAAAGCCAATAACAAATAA
CTATAAGGAAAAGACATTTC

Downstream 100 bases:

>100_bases
AAATGGCCAATAGCAAAAAAATACTGACGCTATCAGTCCCTTTAGCGATCTTTTTGATTGCTTGTTATTTCCTGTTTCAA
GGTTTGTACACTGATCCTCG

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYLFLVNDFTVAYIATNSNSAMP
WYYRLSAVWGAHEGSLLLWVLLLSMWSMAVALMSKRLPVESVARVLAVLGLLSLGFYLFVLLTSNPFDRTLPYFPVDGRD
LNPLLQDIGLIFHPPMLYMGYVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVLLAISAFSLSLLGTFLVRSGVLVSVHAFASDPTRGLFILTYLI
LVIGGSLLLYAVQASKVKSRGRYSIISRETMLLSNNILLIAALIVVLLGTLLPLVHKEMGLGSISIGEPFFNRIFTVLIV
PFALFLGVGSLVRWQRQNLTDLFKPMVILLVVSTLLTLVFLGTLASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL
WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAVNDLQGKNYGGIVGKFTVKYD
QKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGEVLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRY
RVKKVPESAAEVI

Sequences:

>Translated_653_residues
MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYLFLVNDFTVAYIATNSNSAMP
WYYRLSAVWGAHEGSLLLWVLLLSMWSMAVALMSKRLPVESVARVLAVLGLLSLGFYLFVLLTSNPFDRTLPYFPVDGRD
LNPLLQDIGLIFHPPMLYMGYVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVLLAISAFSLSLLGTFLVRSGVLVSVHAFASDPTRGLFILTYLI
LVIGGSLLLYAVQASKVKSRGRYSIISRETMLLSNNILLIAALIVVLLGTLLPLVHKEMGLGSISIGEPFFNRIFTVLIV
PFALFLGVGSLVRWQRQNLTDLFKPMVILLVVSTLLTLVFLGTLASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL
WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAVNDLQGKNYGGIVGKFTVKYD
QKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGEVLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRY
RVKKVPESAAEVI
>Mature_653_residues
MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYLFLVNDFTVAYIATNSNSAMP
WYYRLSAVWGAHEGSLLLWVLLLSMWSMAVALMSKRLPVESVARVLAVLGLLSLGFYLFVLLTSNPFDRTLPYFPVDGRD
LNPLLQDIGLIFHPPMLYMGYVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW
FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVLLAISAFSLSLLGTFLVRSGVLVSVHAFASDPTRGLFILTYLI
LVIGGSLLLYAVQASKVKSRGRYSIISRETMLLSNNILLIAALIVVLLGTLLPLVHKEMGLGSISIGEPFFNRIFTVLIV
PFALFLGVGSLVRWQRQNLTDLFKPMVILLVVSTLLTLVFLGTLASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL
WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAVNDLQGKNYGGIVGKFTVKYD
QKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGEVLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRY
RVKKVPESAAEVI

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=650, Percent_Identity=58.1538461538462, Blast_Score=738, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=594, Percent_Identity=37.8787878787879, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 73181; Mature: 73181

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVNDFTVAYIATNSNSAMPWYYRLSAVWGAHEGSLLLWVLLLSMWSMAVALMSKRLPVE
HHHCCCEEEEEEECCCCCCCHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
SVARVLAVLGLLSLGFYLFVLLTSNPFDRTLPYFPVDGRDLNPLLQDIGLIFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEHHHHHHHHHHHHHHCHHHEEEECCCCEE
FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVLLAISAFSLSLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLFILTYLILVIGGSLLLYAVQASKVKSRGRYSIISRETMLLSNNILLI
EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHH
AALIVVLLGTLLPLVHKEMGLGSISIGEPFFNRIFTVLIVPFALFLGVGSLVRWQRQNLT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DLFKPMVILLVVSTLLTLVFLGTLASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAV
HHHHHHHCCCCEEEEECCCCCEEHEEEHHEECCCCCCCCCEEECCCCEEEEEEEEEECCH
NDLQGKNYGGIVGKFTVKYDQKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGE
HCCCCCCCCCEEEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRYRVKKVPESAAEVI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCC
>Mature Secondary Structure
MLPEIGQVVLAIACMFSLLQVVYPLYGIYAHQQSAIESAKILTVLQFVFVALSFIILAYL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVNDFTVAYIATNSNSAMPWYYRLSAVWGAHEGSLLLWVLLLSMWSMAVALMSKRLPVE
HHHCCCEEEEEEECCCCCCCHHEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH
SVARVLAVLGLLSLGFYLFVLLTSNPFDRTLPYFPVDGRDLNPLLQDIGLIFHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCCHHHHHH
YVGFSVAFAFAIAALMEGRLDSAWAKWSRPWTIAAWTFLTLGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEHHHHHHHHHHHHHHCHHHEEEECCCCEE
FWDPVENASFMPWLAGTALIHSLAVSEKRGVFKSWTVLLAISAFSLSLLGTFLVRSGVLV
EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLFILTYLILVIGGSLLLYAVQASKVKSRGRYSIISRETMLLSNNILLI
EEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHH
AALIVVLLGTLLPLVHKEMGLGSISIGEPFFNRIFTVLIVPFALFLGVGSLVRWQRQNLT
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DLFKPMVILLVVSTLLTLVFLGTLASHFTWLAVLGIFLAMWILTGTCVEIYLRSTHRFSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
WTGMRKLGNSHWAMTLGHAGFAIMLIGITMTQNFSIERDVKLSVGESVRFEHYDFHFDAV
HHHHHHHCCCCEEEEECCCCCEEHEEEHHEECCCCCCCCCEEECCCCEEEEEEEEEECCH
NDLQGKNYGGIVGKFTVKYDQKTVAVMEPEKRIYNVQRTAMTEAAIDSGFTRDLYIAMGE
HCCCCCCCCCEEEEEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VLPDGAWSVRVYYKSFIRWIWFGPMMMALAGVLVIFDRRYRVKKVPESAAEVI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]