| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is glnD [H]
Identifier: 119946625
GI number: 119946625
Start: 3702109
End: 3704718
Strand: Direct
Name: glnD [H]
Synonym: Ping_3004
Alternate gene names: 119946625
Gene position: 3702109-3704718 (Clockwise)
Preceding gene: 119946624
Following gene: 119946648
Centisome position: 81.19
GC content: 41.34
Gene sequence:
>2610_bases ATGGATTTTGAAGCGCTTGCCCCAAACAATATACCCGAAGATGACCTGACGCTGCCCTTCCTAAAAAATCATTTAAAGGA ATTCCACGAATGGCAGGTTGAGTGCTTTTATAAAAAACATAAAATCGCCGACATTGTGACACTGCGGGCACATTATATTG ATCAACTGTTAACACGTTTGTGGAAATATGCGGGACTCGCATTAAGTGAAAATATCTGCCTTGTGGCTGTCGGAGGTTAT GGTCGCGGTGAACTGCATCCTAAATCTGATATTGATCTCCTTATTCTTTCAAAAGAAGGATTTGATGAAGAATCAGAAAA AAAGATAAGCGCCTTTATTACTCAATTATGGGATCTAAAACTCGATATTGGTAACAGCGTACGTACCTTAAAAGATTGTT TTGAACAGGGTAGTGCGGATATTACGGTTGCAACCAGTATGCTCGAAGCGCGTTATATCAGTGGCAATAAACAAGCGTTT GAAAAGCTGACGGCACTCATTGAAGATAAAGATTTTTGGCCTTCGGATCGGTTCTTTACGGTTAAAAAAGAAGAACAAAT TAAGCGTCATAAAAATTGCCGCGGTGATGGTTATAACCTCGAACCGGATCTTAAAAATGGCAGTGGCGGTTTACGTGACA TTCAAACTATTGCATGGATTGCCAAACGTCATTTTGGTGTCAACAGCCTGATAGAATTAACTGGTTCCAACTATATAACC CAAGGGGAATACCGTGAATTAGTCGACTGTCAGGCAATGCTTTGGACAATTCGGTTTGCGCTGCATTCTGTTACAAATCG ACCCGATAATCGTCTGCTGTTTGATTATCAGACCGAGGTTGCACGTATGCTTGGTTATTCAGGATCTGGTAATACTGCTA TTGAGCAGATGATGAAAGCGTTTTATCAAACTATCCATCGCGTAAAAGAGCTCAATGAGATGTTACTGCAATATTTTGAT GAAGCTATTTTAGGTAATATTCCAACGCACATTGAATCTATTGATGAAAATTTTCAATTGCGCGAAGATATGATTGAGCT AAAAACCACCTCATTATTTAACGAACAACCAGAATCAATCCTACAGCTATTCCTGCATATCGCTGAAAATCCCAAAATTA AAGGGATCTACTCTCCCACTCTGCGTGAACTTCATGGCGCACGACGCTGCTTAACACACTGGTTGCAGGACATTCCCGAG TGCCGTGATATTTTTATGGAAATTATCAGGCACCCGCGGGGAATCGGACTGGCATTCACCCTGATGCACAAATATGGCAT TCTAGCGGCTTATATTCCACAGTGGAGCCGAATTGTCGGACAGATGCAGTTTGACTTGTTTCATGCTTACACCGTTGATG AGCATACCCATAAATTGATTAAGAATATTTGCAACTTTAACGAGAATAAACAGATATACCCTATAACCACTGACATTTTT AATCAGTTAGATAAACCTGAACTCCTTTATATAGCGGCTATTTTTCATGATATTGCTAAAGGGCAAAAGGGAGATCATTC TACATTGGGAGCGGTTGATGCACGGGCATTTTGTGAATTACACGGACTCACTCGCTATGAGAGTAAAACAGTTGCCTGGT TAGTTAAGCAACATCTCACCATGTCGGTAACGGCGCAACGTCGCGATATCAGTGATCCGCGGGTGGTCATTGAATTTGCA AAAATAGTGCGCGATGAAAAGCGCTTAAACCTATTACAATGCTTGACCGTTGCTGATATTCGCGCCACCAATGAAGAAAC CTGGAACAGTTGGAAAGCGGCTTTATTACGCGATTTATATTTAAGTACCTTAAAAGTACTGCGGCGCGGATTGGAAAGCC CGCCGGATATTCGTGATCGGATCCGCGACAGGCAACGTAAGACTCTGGTTCTTTTACGCCAGCAAGGTGTTACAGACTCT CAAGCAAAAACACTTTGGAAACGCTTTAAGCTCGATTATTTTTTCCGTTATCGCTCGAAACAAATAGCTTGGCATACTAA AAATCTTTTAGCCCATAAAGATCATAGTCGACCAATGGTTTTAATCAGTGAGCAAAAAAGCAGTGAGGCAACTGAAATTT TTGTCTATCATAAAGAGATGCCAGCGTTATTTTCCAGCGTTGTCACTGTTATTGATAATAAAAAACTCAGTATTCATGAT GCAAAAATTCTCTCAAGCAGAGATGATTTTTCATTAAGTACTTTTACTGTATTGGAAGAGGACGGTAGCCATATTGATCC TGAGAAAATTCAGCGCCTCAAAAAAGAAATCGAAATGGCACTGCTTGCGCCAGAAAAAGTCAATAGACAACAAACTCGCC TGGCACGTGTTAAACGCCAATTCAAATTTGAACCGCAAGTGACTTTTTTACCCACACGCCGTAAACGCACCCAAATTGAA CTGGTCGCTTTTGATGCACCGGGAATTTTAGCTGATATTGGCGAGATTTTCAGATTCAGCGGCATGGTTCTTTTTACGGC TAAAATAACCACCATTGGCGAGCGTGCGGAGGATCTCTTTATTATTTCAACGGCCGAAGGGAATGCACTGACTGAGCAGC AGGAAGAAAACTTAAAAGCCCAGTTGATGATCAAGCTTAGCCCTGACTGA
Upstream 100 bases:
>100_bases AGCATCCATTTTAACCAGCATAAATGAATAGAAAATGAGTAGATTTGGTATATTAGGTGTTTTACACCCATCATTTAGTT CTAATTAAGCAGAGGTTACA
Downstream 100 bases:
>100_bases TAAAAATTTGCAGCAACTAATTAATGGCGGAAACTCGCCATTAATTTTATTCTGTTTCAAAGGTTACAAAATCATGGCTG AGCTTTAAGGCTGCGAGCTT
Product: UTP-GlnB uridylyltransferase, GlnD
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 869; Mature: 869
Protein sequence:
>869_residues MDFEALAPNNIPEDDLTLPFLKNHLKEFHEWQVECFYKKHKIADIVTLRAHYIDQLLTRLWKYAGLALSENICLVAVGGY GRGELHPKSDIDLLILSKEGFDEESEKKISAFITQLWDLKLDIGNSVRTLKDCFEQGSADITVATSMLEARYISGNKQAF EKLTALIEDKDFWPSDRFFTVKKEEQIKRHKNCRGDGYNLEPDLKNGSGGLRDIQTIAWIAKRHFGVNSLIELTGSNYIT QGEYRELVDCQAMLWTIRFALHSVTNRPDNRLLFDYQTEVARMLGYSGSGNTAIEQMMKAFYQTIHRVKELNEMLLQYFD EAILGNIPTHIESIDENFQLREDMIELKTTSLFNEQPESILQLFLHIAENPKIKGIYSPTLRELHGARRCLTHWLQDIPE CRDIFMEIIRHPRGIGLAFTLMHKYGILAAYIPQWSRIVGQMQFDLFHAYTVDEHTHKLIKNICNFNENKQIYPITTDIF NQLDKPELLYIAAIFHDIAKGQKGDHSTLGAVDARAFCELHGLTRYESKTVAWLVKQHLTMSVTAQRRDISDPRVVIEFA KIVRDEKRLNLLQCLTVADIRATNEETWNSWKAALLRDLYLSTLKVLRRGLESPPDIRDRIRDRQRKTLVLLRQQGVTDS QAKTLWKRFKLDYFFRYRSKQIAWHTKNLLAHKDHSRPMVLISEQKSSEATEIFVYHKEMPALFSSVVTVIDNKKLSIHD AKILSSRDDFSLSTFTVLEEDGSHIDPEKIQRLKKEIEMALLAPEKVNRQQTRLARVKRQFKFEPQVTFLPTRRKRTQIE LVAFDAPGILADIGEIFRFSGMVLFTAKITTIGERAEDLFIISTAEGNALTEQQEENLKAQLMIKLSPD
Sequences:
>Translated_869_residues MDFEALAPNNIPEDDLTLPFLKNHLKEFHEWQVECFYKKHKIADIVTLRAHYIDQLLTRLWKYAGLALSENICLVAVGGY GRGELHPKSDIDLLILSKEGFDEESEKKISAFITQLWDLKLDIGNSVRTLKDCFEQGSADITVATSMLEARYISGNKQAF EKLTALIEDKDFWPSDRFFTVKKEEQIKRHKNCRGDGYNLEPDLKNGSGGLRDIQTIAWIAKRHFGVNSLIELTGSNYIT QGEYRELVDCQAMLWTIRFALHSVTNRPDNRLLFDYQTEVARMLGYSGSGNTAIEQMMKAFYQTIHRVKELNEMLLQYFD EAILGNIPTHIESIDENFQLREDMIELKTTSLFNEQPESILQLFLHIAENPKIKGIYSPTLRELHGARRCLTHWLQDIPE CRDIFMEIIRHPRGIGLAFTLMHKYGILAAYIPQWSRIVGQMQFDLFHAYTVDEHTHKLIKNICNFNENKQIYPITTDIF NQLDKPELLYIAAIFHDIAKGQKGDHSTLGAVDARAFCELHGLTRYESKTVAWLVKQHLTMSVTAQRRDISDPRVVIEFA KIVRDEKRLNLLQCLTVADIRATNEETWNSWKAALLRDLYLSTLKVLRRGLESPPDIRDRIRDRQRKTLVLLRQQGVTDS QAKTLWKRFKLDYFFRYRSKQIAWHTKNLLAHKDHSRPMVLISEQKSSEATEIFVYHKEMPALFSSVVTVIDNKKLSIHD AKILSSRDDFSLSTFTVLEEDGSHIDPEKIQRLKKEIEMALLAPEKVNRQQTRLARVKRQFKFEPQVTFLPTRRKRTQIE LVAFDAPGILADIGEIFRFSGMVLFTAKITTIGERAEDLFIISTAEGNALTEQQEENLKAQLMIKLSPD >Mature_869_residues MDFEALAPNNIPEDDLTLPFLKNHLKEFHEWQVECFYKKHKIADIVTLRAHYIDQLLTRLWKYAGLALSENICLVAVGGY GRGELHPKSDIDLLILSKEGFDEESEKKISAFITQLWDLKLDIGNSVRTLKDCFEQGSADITVATSMLEARYISGNKQAF EKLTALIEDKDFWPSDRFFTVKKEEQIKRHKNCRGDGYNLEPDLKNGSGGLRDIQTIAWIAKRHFGVNSLIELTGSNYIT QGEYRELVDCQAMLWTIRFALHSVTNRPDNRLLFDYQTEVARMLGYSGSGNTAIEQMMKAFYQTIHRVKELNEMLLQYFD EAILGNIPTHIESIDENFQLREDMIELKTTSLFNEQPESILQLFLHIAENPKIKGIYSPTLRELHGARRCLTHWLQDIPE CRDIFMEIIRHPRGIGLAFTLMHKYGILAAYIPQWSRIVGQMQFDLFHAYTVDEHTHKLIKNICNFNENKQIYPITTDIF NQLDKPELLYIAAIFHDIAKGQKGDHSTLGAVDARAFCELHGLTRYESKTVAWLVKQHLTMSVTAQRRDISDPRVVIEFA KIVRDEKRLNLLQCLTVADIRATNEETWNSWKAALLRDLYLSTLKVLRRGLESPPDIRDRIRDRQRKTLVLLRQQGVTDS QAKTLWKRFKLDYFFRYRSKQIAWHTKNLLAHKDHSRPMVLISEQKSSEATEIFVYHKEMPALFSSVVTVIDNKKLSIHD AKILSSRDDFSLSTFTVLEEDGSHIDPEKIQRLKKEIEMALLAPEKVNRQQTRLARVKRQFKFEPQVTFLPTRRKRTQIE LVAFDAPGILADIGEIFRFSGMVLFTAKITTIGERAEDLFIISTAEGNALTEQQEENLKAQLMIKLSPD
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=871, Percent_Identity=47.7611940298507, Blast_Score=831, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 100569; Mature: 100569
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFEALAPNNIPEDDLTLPFLKNHLKEFHEWQVECFYKKHKIADIVTLRAHYIDQLLTRL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WKYAGLALSENICLVAVGGYGRGELHPKSDIDLLILSKEGFDEESEKKISAFITQLWDLK HHHHCCEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHE LDIGNSVRTLKDCFEQGSADITVATSMLEARYISGNKQAFEKLTALIEDKDFWPSDRFFT ECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEE VKKEEQIKRHKNCRGDGYNLEPDLKNGSGGLRDIQTIAWIAKRHFGVNSLIELTGSNYIT ECHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEE QGEYRELVDCQAMLWTIRFALHSVTNRPDNRLLFDYQTEVARMLGYSGSGNTAIEQMMKA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHH FYQTIHRVKELNEMLLQYFDEAILGNIPTHIESIDENFQLREDMIELKTTSLFNEQPESI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHH LQLFLHIAENPKIKGIYSPTLRELHGARRCLTHWLQDIPECRDIFMEIIRHPRGIGLAFT HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHH LMHKYGILAAYIPQWSRIVGQMQFDLFHAYTVDEHTHKLIKNICNFNENKQIYPITTDIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHH NQLDKPELLYIAAIFHDIAKGQKGDHSTLGAVDARAFCELHGLTRYESKTVAWLVKQHLT HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHH MSVTAQRRDISDPRVVIEFAKIVRDEKRLNLLQCLTVADIRATNEETWNSWKAALLRDLY HEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LSTLKVLRRGLESPPDIRDRIRDRQRKTLVLLRQQGVTDSQAKTLWKRFKLDYFFRYRSK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC QIAWHTKNLLAHKDHSRPMVLISEQKSSEATEIFVYHKEMPALFSSVVTVIDNKKLSIHD HHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEH AKILSSRDDFSLSTFTVLEEDGSHIDPEKIQRLKKEIEMALLAPEKVNRQQTRLARVKRQ HHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH FKFEPQVTFLPTRRKRTQIELVAFDAPGILADIGEIFRFSGMVLFTAKITTIGERAEDLF HCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEEEHHHHHCCCCCEE IISTAEGNALTEQQEENLKAQLMIKLSPD EEEECCCCCCCHHHHCCCEEEEEEEECCC >Mature Secondary Structure MDFEALAPNNIPEDDLTLPFLKNHLKEFHEWQVECFYKKHKIADIVTLRAHYIDQLLTRL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WKYAGLALSENICLVAVGGYGRGELHPKSDIDLLILSKEGFDEESEKKISAFITQLWDLK HHHHCCEECCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHE LDIGNSVRTLKDCFEQGSADITVATSMLEARYISGNKQAFEKLTALIEDKDFWPSDRFFT ECCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEE VKKEEQIKRHKNCRGDGYNLEPDLKNGSGGLRDIQTIAWIAKRHFGVNSLIELTGSNYIT ECHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCEE QGEYRELVDCQAMLWTIRFALHSVTNRPDNRLLFDYQTEVARMLGYSGSGNTAIEQMMKA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCHHHHHHHHH FYQTIHRVKELNEMLLQYFDEAILGNIPTHIESIDENFQLREDMIELKTTSLFNEQPESI HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHH LQLFLHIAENPKIKGIYSPTLRELHGARRCLTHWLQDIPECRDIFMEIIRHPRGIGLAFT HHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHH LMHKYGILAAYIPQWSRIVGQMQFDLFHAYTVDEHTHKLIKNICNFNENKQIYPITTDIF HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCEEEEEEHHHH NQLDKPELLYIAAIFHDIAKGQKGDHSTLGAVDARAFCELHGLTRYESKTVAWLVKQHLT HCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHHH MSVTAQRRDISDPRVVIEFAKIVRDEKRLNLLQCLTVADIRATNEETWNSWKAALLRDLY HEEEEHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LSTLKVLRRGLESPPDIRDRIRDRQRKTLVLLRQQGVTDSQAKTLWKRFKLDYFFRYRSK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC QIAWHTKNLLAHKDHSRPMVLISEQKSSEATEIFVYHKEMPALFSSVVTVIDNKKLSIHD HHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEH AKILSSRDDFSLSTFTVLEEDGSHIDPEKIQRLKKEIEMALLAPEKVNRQQTRLARVKRQ HHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHH FKFEPQVTFLPTRRKRTQIELVAFDAPGILADIGEIFRFSGMVLFTAKITTIGERAEDLF HCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEEEHHHHHCCCCCEE IISTAEGNALTEQQEENLKAQLMIKLSPD EEEECCCCCCCHHHHCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA