Click here to switch to the map view.

The map label for this gene is lptA [H]

Identifier: 119946513

GI number: 119946513

Start: 3568426

End: 3568947

Strand: Direct

Name: lptA [H]

Synonym: Ping_2890

Alternate gene names: 119946513

Gene position: 3568426-3568947 (Clockwise)

Preceding gene: 119946512

Following gene: 119946514

Centisome position: 78.26

GC content: 38.51

Gene sequence:

>522_bases
ATGAAAATAAATAAATTAAGCTTAATCATCAGTACACTCCTTATCTCTTTTGCAAGTATTGCGCTGGAGTCCGACTTCAC
TCAGCCCATTCACGTCAGTTCTGTGAGCCAGCACGTGACGATGAAAAATGATCGGGTTGTATTTCAAGATGATGTATTAC
TAACCCAAGGTACTATTAAATTAACTGCTGACAAACTGACCGTTATTCAAGGAAAACAATCTAATCAAGAGATCATGATT
GCAGAAGGTAGCGTAGCCACTTTTTACCAAACCCAAGAAGATGGAAAACCCATCGATGCAGAGGCAAATGTTATTCGTTA
CGATGTGGCTAAGGCCCAAGTAACGCTTACTGGCAATGCCCAGGTTAAACAACTTAAGAGCCAAATAAATGGTTCAAAAA
TTATTTATTTTATGGAAACAGAAGAACTAACCGTGAGCAACGATGGCAAAGAAACACGTGTAACAACAGTTTTTTTACCC
GCTCAGTTTGAGAAAAAAAGTACTGTGGGGAAAGAAGAATAA

Upstream 100 bases:

>100_bases
TTGGAAGGCCCTCAGATTCATCAGCAGGGTGTTGGCATGTGGGCTTCTCTTGTCACTGAAGAGGTCATTATAAAAGATCA
AATAAAAGCGGTATACTTCA

Downstream 100 bases:

>100_bases
AAATGGCAGAGTTAATCGCGCAAGGTTTAGTAAAAAGTTATAAAGGCAGAACCGTTGTAAACGGTGTCGATTTAACGGTA
AAAACGGGTGAAATCGTCGG

Product: OstA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKINKLSLIISTLLISFASIALESDFTQPIHVSSVSQHVTMKNDRVVFQDDVLLTQGTIKLTADKLTVIQGKQSNQEIMI
AEGSVATFYQTQEDGKPIDAEANVIRYDVAKAQVTLTGNAQVKQLKSQINGSKIIYFMETEELTVSNDGKETRVTTVFLP
AQFEKKSTVGKEE

Sequences:

>Translated_173_residues
MKINKLSLIISTLLISFASIALESDFTQPIHVSSVSQHVTMKNDRVVFQDDVLLTQGTIKLTADKLTVIQGKQSNQEIMI
AEGSVATFYQTQEDGKPIDAEANVIRYDVAKAQVTLTGNAQVKQLKSQINGSKIIYFMETEELTVSNDGKETRVTTVFLP
AQFEKKSTVGKEE
>Mature_173_residues
MKINKLSLIISTLLISFASIALESDFTQPIHVSSVSQHVTMKNDRVVFQDDVLLTQGTIKLTADKLTVIQGKQSNQEIMI
AEGSVATFYQTQEDGKPIDAEANVIRYDVAKAQVTLTGNAQVKQLKSQINGSKIIYFMETEELTVSNDGKETRVTTVFLP
AQFEKKSTVGKEE

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane. May act as a chaperone that facilitates LPS transfer across the aquaeous environment of the periplasm. Interacts specifically with the lipid A domain

COG id: COG1934

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptA family [H]

Homologues:

Organism=Escherichia coli, GI1789592, Length=176, Percent_Identity=40.3409090909091, Blast_Score=127, Evalue=3e-31,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014340
- InterPro:   IPR005653 [H]

Pfam domain/function: PF03968 OstA [H]

EC number: NA

Molecular weight: Translated: 19128; Mature: 19128

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINKLSLIISTLLISFASIALESDFTQPIHVSSVSQHVTMKNDRVVFQDDVLLTQGTIK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCEEEEECCEEEECCEEE
LTADKLTVIQGKQSNQEIMIAEGSVATFYQTQEDGKPIDAEANVIRYDVAKAQVTLTGNA
EEECEEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCH
QVKQLKSQINGSKIIYFMETEELTVSNDGKETRVTTVFLPAQFEKKSTVGKEE
HHHHHHHHCCCCEEEEEEECCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKINKLSLIISTLLISFASIALESDFTQPIHVSSVSQHVTMKNDRVVFQDDVLLTQGTIK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEECCCEEEEECCEEEECCEEE
LTADKLTVIQGKQSNQEIMIAEGSVATFYQTQEDGKPIDAEANVIRYDVAKAQVTLTGNA
EEECEEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEEEEEEECCH
QVKQLKSQINGSKIIYFMETEELTVSNDGKETRVTTVFLPAQFEKKSTVGKEE
HHHHHHHHCCCCEEEEEEECCEEEECCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]