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The map label for this gene is deoC [H]

Identifier: 119946486

GI number: 119946486

Start: 3542112

End: 3542885

Strand: Direct

Name: deoC [H]

Synonym: Ping_2862

Alternate gene names: 119946486

Gene position: 3542112-3542885 (Clockwise)

Preceding gene: 119946485

Following gene: 119946487

Centisome position: 77.68

GC content: 43.15

Gene sequence:

>774_bases
ATGCGCGACTTACAACAAGCATCCCGTTTAGCCATCCAATTAATGGATCTCACCACGCTAAATGACGATGATAACGATCA
AAAAGTGATACAACTCTGTAAAGCGGCACACACCATAGCAGGTGATACGGCCGCAGTTTGTATTTACCCGCGTTTTATTC
CTATTGCACGTAAAACACTTACATTGCAAAATACACCACAAATTAAAATTGCGACAGTCACTAATTTCCCACACGGTAAT
GATGATTTGAATATCGCTTTGGCAGAAACGCGGGCGGCGGTGGCCTATGGTGCCGATGAGGTTGACCTTGTCTTTCCTTA
CCGCGCACTGATCGAAGGCAATGCTGAAATCGGGACGACTATGGTTAAAGCCTGCAAAGATATTTGTGGTGATAACGTTA
CCCTGAAAGTGATTATTGAGTCAGGAGAATTAAAAACCCCTGAATTAATAAAAGCAGCCAGTGAAATTTGTATTAATGCC
GGCGCTGATTTTATTAAAACATCAACAGGTAAAGTGCCTGTTAATGCAACGTTAGAAGCGACTAAGATAATGCTTGAAGC
GATCAAAGAGTCTGGCCTTAATGTTGGTTTTAAAGCTGCCGGTGGTGTTAAGGATGCGCAGACGGCCGATGATTATATGC
AATTGGCAAGCAGTATTATGGGCGATAACTGGGTCGATAGAACACATTTCCGATTTGGCGCATCGAGCTTACTCGGCGCT
TTATTATCGGCACTTAATTTGGCTGATAAAGCCACTGAAACAGGAGGTTACTAA

Upstream 100 bases:

>100_bases
CACCATCAATAAACAAGTCCTTAGGGATGTCAATGCGCATCACTAGGGCCGGCTTAATAATAATATAGGCTGTCATCACC
CGAATTAAAGGAAGAAAATT

Downstream 100 bases:

>100_bases
TGAAACGTACCGTTATCTTATTACTTGATTCTTTTGGTGTTGGCGGCGCAGCTGATGCCGATAAATTTATTGGCTCATTA
GCTGACGGCAGTCAATATGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MRDLQQASRLAIQLMDLTTLNDDDNDQKVIQLCKAAHTIAGDTAAVCIYPRFIPIARKTLTLQNTPQIKIATVTNFPHGN
DDLNIALAETRAAVAYGADEVDLVFPYRALIEGNAEIGTTMVKACKDICGDNVTLKVIIESGELKTPELIKAASEICINA
GADFIKTSTGKVPVNATLEATKIMLEAIKESGLNVGFKAAGGVKDAQTADDYMQLASSIMGDNWVDRTHFRFGASSLLGA
LLSALNLADKATETGGY

Sequences:

>Translated_257_residues
MRDLQQASRLAIQLMDLTTLNDDDNDQKVIQLCKAAHTIAGDTAAVCIYPRFIPIARKTLTLQNTPQIKIATVTNFPHGN
DDLNIALAETRAAVAYGADEVDLVFPYRALIEGNAEIGTTMVKACKDICGDNVTLKVIIESGELKTPELIKAASEICINA
GADFIKTSTGKVPVNATLEATKIMLEAIKESGLNVGFKAAGGVKDAQTADDYMQLASSIMGDNWVDRTHFRFGASSLLGA
LLSALNLADKATETGGY
>Mature_257_residues
MRDLQQASRLAIQLMDLTTLNDDDNDQKVIQLCKAAHTIAGDTAAVCIYPRFIPIARKTLTLQNTPQIKIATVTNFPHGN
DDLNIALAETRAAVAYGADEVDLVFPYRALIEGNAEIGTTMVKACKDICGDNVTLKVIIESGELKTPELIKAASEICINA
GADFIKTSTGKVPVNATLEATKIMLEAIKESGLNVGFKAAGGVKDAQTADDYMQLASSIMGDNWVDRTHFRFGASSLLGA
LLSALNLADKATETGGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=257, Percent_Identity=37.3540856031128, Blast_Score=138, Evalue=4e-33,
Organism=Escherichia coli, GI1790841, Length=236, Percent_Identity=62.7118644067797, Blast_Score=298, Evalue=2e-82,
Organism=Caenorhabditis elegans, GI17533015, Length=246, Percent_Identity=40.650406504065, Blast_Score=150, Evalue=4e-37,
Organism=Drosophila melanogaster, GI19922098, Length=252, Percent_Identity=37.6984126984127, Blast_Score=130, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 27436; Mature: 27436

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLQQASRLAIQLMDLTTLNDDDNDQKVIQLCKAAHTIAGDTAAVCIYPRFIPIARKTL
CCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHEE
TLQNTPQIKIATVTNFPHGNDDLNIALAETRAAVAYGADEVDLVFPYRALIEGNAEIGTT
EECCCCCEEEEEEECCCCCCCCEEEEEECHHHHHHCCCCCEEEEECHHHHHCCCCHHHHH
MVKACKDICGDNVTLKVIIESGELKTPELIKAASEICINAGADFIKTSTGKVPVNATLEA
HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHH
TKIMLEAIKESGLNVGFKAAGGVKDAQTADDYMQLASSIMGDNWVDRTHFRFGASSLLGA
HHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHH
LLSALNLADKATETGGY
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRDLQQASRLAIQLMDLTTLNDDDNDQKVIQLCKAAHTIAGDTAAVCIYPRFIPIARKTL
CCCHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHEE
TLQNTPQIKIATVTNFPHGNDDLNIALAETRAAVAYGADEVDLVFPYRALIEGNAEIGTT
EECCCCCEEEEEEECCCCCCCCEEEEEECHHHHHHCCCCCEEEEECHHHHHCCCCHHHHH
MVKACKDICGDNVTLKVIIESGELKTPELIKAASEICINAGADFIKTSTGKVPVNATLEA
HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHH
TKIMLEAIKESGLNVGFKAAGGVKDAQTADDYMQLASSIMGDNWVDRTHFRFGASSLLGA
HHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHH
LLSALNLADKATETGGY
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA