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The map label for this gene is rbsC [H]

Identifier: 119946415

GI number: 119946415

Start: 3431189

End: 3432160

Strand: Reverse

Name: rbsC [H]

Synonym: Ping_2789

Alternate gene names: 119946415

Gene position: 3432160-3431189 (Counterclockwise)

Preceding gene: 119946416

Following gene: 119946414

Centisome position: 75.27

GC content: 37.35

Gene sequence:

>972_bases
ATGTATGATATATATGCTAAAAATGTCAATCTTGGCGTTGTTGCAAAACAAGGGTTTTTGATCGGTTTTATTGTTCTTTT
ATTTGTATTTTCATTGTTTTCTGATGAGTTTTTACAATCAAGAAACGTAATGACAGTGATCAGTCAAGCAGCGATCATCG
GTGTGATAGCGATAGGCGTCACCTTTGTTATTGTAGGCGGAAATTTAGACCTTTCCGTAGGTTCAATGTTGTCCTTTGGC
GCGGTATTGGTGGCAGATCTCCACGATAAAATAGGGGCATATCCAGCCATCGCTTGCATGATGATGGCATTATTAGTTAT
TGGCTCAGTCAACGGTTTTTTAGTTGCATATTTAAAATTAAATTCATTAATTGTTACCTTAGGGATGCTTTCAGTTATCC
AAGGTATGACACTGATATATACCAGTGGAAAAAATGTGGACATCACCGCTCAGGATACGAGCGTATTTGACTTTATTAAT
AAAGGTACTGTGTTTGATATACCGGTTCCAATAATTTTATTTATTCTGCTCGGTTTGGCAATGGAAATATTATTAAAAGG
CACAGTGTTTGGCCGTAAATTATTTGCTACAGGTGGTAATCCTAAAGCCGTTTTGTTTTCTGGTATCAACAGTGCAAAAG
TTGTATTTTCAACCTATTTATTATCTGCTTTTACGACGGGATGTGCCTCCATTCTTATTGCTTCAAGGGTCATGGGTGCA
CAAAATACGGTAGGTCAAGGTTATGAATTAGTTGTACTCGCAGGGGTAATCTTAGGCGGAGCAAGCCTATTAGGCGGCTC
AGGCAGTATTATTAAAACAATACTCGGCGTTCTAGTCTTAAAATTTCTACAGAATGGATTATTACTATTAGGTTTTCAAT
ATTATATACAGTGGGTCGTGACATGGGTGGTAATTATATTTGCTGTTTGGCTAGATATAGCAGTGACGAGACGAAAAGTA
TTGCTGGATTAA

Upstream 100 bases:

>100_bases
TTTGTATATAACAATGCCTTTGTTAATGATTAATCGCTAGTACTTTAATCAACAAACTCAACTGTAATGGTGATATATGT
TTAGTGTGATAAATAGATAT

Downstream 100 bases:

>100_bases
CTAATAAGTATTAAAGGATCACCTATGAGATGGAATAATTTCAATAAATTAAAGATACAACCAATCTGGTTTTTTGTGCT
TATCTTAATTGTATTTTTTA

Product: ABC ribose transporter permease component

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MYDIYAKNVNLGVVAKQGFLIGFIVLLFVFSLFSDEFLQSRNVMTVISQAAIIGVIAIGVTFVIVGGNLDLSVGSMLSFG
AVLVADLHDKIGAYPAIACMMMALLVIGSVNGFLVAYLKLNSLIVTLGMLSVIQGMTLIYTSGKNVDITAQDTSVFDFIN
KGTVFDIPVPIILFILLGLAMEILLKGTVFGRKLFATGGNPKAVLFSGINSAKVVFSTYLLSAFTTGCASILIASRVMGA
QNTVGQGYELVVLAGVILGGASLLGGSGSIIKTILGVLVLKFLQNGLLLLGFQYYIQWVVTWVVIIFAVWLDIAVTRRKV
LLD

Sequences:

>Translated_323_residues
MYDIYAKNVNLGVVAKQGFLIGFIVLLFVFSLFSDEFLQSRNVMTVISQAAIIGVIAIGVTFVIVGGNLDLSVGSMLSFG
AVLVADLHDKIGAYPAIACMMMALLVIGSVNGFLVAYLKLNSLIVTLGMLSVIQGMTLIYTSGKNVDITAQDTSVFDFIN
KGTVFDIPVPIILFILLGLAMEILLKGTVFGRKLFATGGNPKAVLFSGINSAKVVFSTYLLSAFTTGCASILIASRVMGA
QNTVGQGYELVVLAGVILGGASLLGGSGSIIKTILGVLVLKFLQNGLLLLGFQYYIQWVVTWVVIIFAVWLDIAVTRRKV
LLD
>Mature_323_residues
MYDIYAKNVNLGVVAKQGFLIGFIVLLFVFSLFSDEFLQSRNVMTVISQAAIIGVIAIGVTFVIVGGNLDLSVGSMLSFG
AVLVADLHDKIGAYPAIACMMMALLVIGSVNGFLVAYLKLNSLIVTLGMLSVIQGMTLIYTSGKNVDITAQDTSVFDFIN
KGTVFDIPVPIILFILLGLAMEILLKGTVFGRKLFATGGNPKAVLFSGINSAKVVFSTYLLSAFTTGCASILIASRVMGA
QNTVGQGYELVVLAGVILGGASLLGGSGSIIKTILGVLVLKFLQNGLLLLGFQYYIQWVVTWVVIIFAVWLDIAVTRRKV
LLD

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=36.4548494983278, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=34.3234323432343, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI145693152, Length=307, Percent_Identity=31.2703583061889, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790524, Length=304, Percent_Identity=31.9078947368421, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787794, Length=274, Percent_Identity=28.4671532846715, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=29.6875, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788471, Length=324, Percent_Identity=30.8641975308642, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87082395, Length=274, Percent_Identity=28.1021897810219, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=31.0606060606061, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787793, Length=261, Percent_Identity=32.183908045977, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34370; Mature: 34370

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDIYAKNVNLGVVAKQGFLIGFIVLLFVFSLFSDEFLQSRNVMTVISQAAIIGVIAIGV
CCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TFVIVGGNLDLSVGSMLSFGAVLVADLHDKIGAYPAIACMMMALLVIGSVNGFLVAYLKL
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
NSLIVTLGMLSVIQGMTLIYTSGKNVDITAQDTSVFDFINKGTVFDIPVPIILFILLGLA
HHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHCCCCEEECCHHHHHHHHHHHH
MEILLKGTVFGRKLFATGGNPKAVLFSGINSAKVVFSTYLLSAFTTGCASILIASRVMGA
HHHHHHHHHHCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QNTVGQGYELVVLAGVILGGASLLGGSGSIIKTILGVLVLKFLQNGLLLLGFQYYIQWVV
CCCCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TWVVIIFAVWLDIAVTRRKVLLD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYDIYAKNVNLGVVAKQGFLIGFIVLLFVFSLFSDEFLQSRNVMTVISQAAIIGVIAIGV
CCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TFVIVGGNLDLSVGSMLSFGAVLVADLHDKIGAYPAIACMMMALLVIGSVNGFLVAYLKL
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
NSLIVTLGMLSVIQGMTLIYTSGKNVDITAQDTSVFDFINKGTVFDIPVPIILFILLGLA
HHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCHHHHHHCCCCEEECCHHHHHHHHHHHH
MEILLKGTVFGRKLFATGGNPKAVLFSGINSAKVVFSTYLLSAFTTGCASILIASRVMGA
HHHHHHHHHHCCEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QNTVGQGYELVVLAGVILGGASLLGGSGSIIKTILGVLVLKFLQNGLLLLGFQYYIQWVV
CCCCCCCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TWVVIIFAVWLDIAVTRRKVLLD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]