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The map label for this gene is rbsC [H]

Identifier: 119946414

GI number: 119946414

Start: 3430220

End: 3431164

Strand: Reverse

Name: rbsC [H]

Synonym: Ping_2788

Alternate gene names: 119946414

Gene position: 3431164-3430220 (Counterclockwise)

Preceding gene: 119946415

Following gene: 119946413

Centisome position: 75.25

GC content: 35.34

Gene sequence:

>945_bases
ATGAGATGGAATAATTTCAATAAATTAAAGATACAACCAATCTGGTTTTTTGTGCTTATCTTAATTGTATTTTTTAGTAG
CACATCGGAATATTTTTTTGAATTCAGTAATTTTAAAAATATATTTATTCAGACATCGACGATTGGCTTAATTGCATTAG
GACTTACATTTGTAATGATCAATGGAAATATTGATTTGTCCGTGGGTTCAATGGTTGCTTTATCCGCTTCAATTACGATA
GGCCTCCAGGGATACGGGTTAGGATTTTCAATATTTGCGGCACTGTTAGCTGGCGTCCTGTTTGGAGCTCTAAATGGGAT
TATAGTTTGGAAAACAGGGGTTGATTCATTTATCGTCACCTTAGGCGCGATGATTGGAATAAGAGGCGTGGTGTTTATTT
ATACAGAAGAACAATCCTTCTATGCATTAGATTTTGCCTTTTCAGATTTTGGAAGTAGTTCTCTTTTAGGTATACCAAGT
TTAGTACTTATATTTTTATTTTTTTCATGGTTAATGCATTTTATTCTGAGTCGAACGATACATGGTAGGAATATGTTAGC
CATTGGAGGCAGTCGTACAGCTTCGCTCAATGCCGGTATGAAAATAGGCAGGCACTTAATGATTAACTTTATGATATGTG
GATTTTTAGCTGCACTAGCAGGTATTACTTTATCTTCCCAGATGGGAGCATCTACTCCTAATTTAGGTCGAGATTTTGAA
CTTTGGGCTATCACAGCTGTTGTTCTTGGTGGCACTCATTTAAAAGGTGGCTCAGGTAGTATTATTGGTACTTTAGGGGG
AGTTATTGCAATTGGTGTTCTACGAAATGGGATGAATCTCTTACATATACCCTCGTTTTATGTCCTTGTTATCTTAGGCG
TCATCTTAATTAGTGTTATTTATTTTGATAGCTTGATGAAAAATAAAATGGAGCTAAGTCAATAA

Upstream 100 bases:

>100_bases
CGTGACATGGGTGGTAATTATATTTGCTGTTTGGCTAGATATAGCAGTGACGAGACGAAAAGTATTGCTGGATTAACTAA
TAAGTATTAAAGGATCACCT

Downstream 100 bases:

>100_bases
TATGTCTAATCCAAATTTAATATTGTCGATCTCAAATATAACAAAAAAATTCCCGCCGTCAGTTGTCGCTTTGTCTGATG
TGTCATTAGATATTTACACA

Product: ABC-type transporter for ribose/xylose/arabinose/galactoside systems, permease protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRWNNFNKLKIQPIWFFVLILIVFFSSTSEYFFEFSNFKNIFIQTSTIGLIALGLTFVMINGNIDLSVGSMVALSASITI
GLQGYGLGFSIFAALLAGVLFGALNGIIVWKTGVDSFIVTLGAMIGIRGVVFIYTEEQSFYALDFAFSDFGSSSLLGIPS
LVLIFLFFSWLMHFILSRTIHGRNMLAIGGSRTASLNAGMKIGRHLMINFMICGFLAALAGITLSSQMGASTPNLGRDFE
LWAITAVVLGGTHLKGGSGSIIGTLGGVIAIGVLRNGMNLLHIPSFYVLVILGVILISVIYFDSLMKNKMELSQ

Sequences:

>Translated_314_residues
MRWNNFNKLKIQPIWFFVLILIVFFSSTSEYFFEFSNFKNIFIQTSTIGLIALGLTFVMINGNIDLSVGSMVALSASITI
GLQGYGLGFSIFAALLAGVLFGALNGIIVWKTGVDSFIVTLGAMIGIRGVVFIYTEEQSFYALDFAFSDFGSSSLLGIPS
LVLIFLFFSWLMHFILSRTIHGRNMLAIGGSRTASLNAGMKIGRHLMINFMICGFLAALAGITLSSQMGASTPNLGRDFE
LWAITAVVLGGTHLKGGSGSIIGTLGGVIAIGVLRNGMNLLHIPSFYVLVILGVILISVIYFDSLMKNKMELSQ
>Mature_314_residues
MRWNNFNKLKIQPIWFFVLILIVFFSSTSEYFFEFSNFKNIFIQTSTIGLIALGLTFVMINGNIDLSVGSMVALSASITI
GLQGYGLGFSIFAALLAGVLFGALNGIIVWKTGVDSFIVTLGAMIGIRGVVFIYTEEQSFYALDFAFSDFGSSSLLGIPS
LVLIFLFFSWLMHFILSRTIHGRNMLAIGGSRTASLNAGMKIGRHLMINFMICGFLAALAGITLSSQMGASTPNLGRDFE
LWAITAVVLGGTHLKGGSGSIIGTLGGVIAIGVLRNGMNLLHIPSFYVLVILGVILISVIYFDSLMKNKMELSQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=299, Percent_Identity=35.4515050167224, Blast_Score=167, Evalue=8e-43,
Organism=Escherichia coli, GI1790191, Length=292, Percent_Identity=35.2739726027397, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=32.3717948717949, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789992, Length=374, Percent_Identity=30.4812834224599, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=33.0188679245283, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787794, Length=277, Percent_Identity=32.4909747292419, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082395, Length=249, Percent_Identity=33.7349397590361, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=29.7202797202797, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693214, Length=228, Percent_Identity=34.6491228070175, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788471, Length=292, Percent_Identity=29.7945205479452, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33997; Mature: 33997

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWNNFNKLKIQPIWFFVLILIVFFSSTSEYFFEFSNFKNIFIQTSTIGLIALGLTFVMI
CCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECHHHHHHHHHEEEEE
NGNIDLSVGSMVALSASITIGLQGYGLGFSIFAALLAGVLFGALNGIIVWKTGVDSFIVT
CCCEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHH
LGAMIGIRGVVFIYTEEQSFYALDFAFSDFGSSSLLGIPSLVLIFLFFSWLMHFILSRTI
HHHHHHHCEEEEEEECCCCEEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HGRNMLAIGGSRTASLNAGMKIGRHLMINFMICGFLAALAGITLSSQMGASTPNLGRDFE
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHH
LWAITAVVLGGTHLKGGSGSIIGTLGGVIAIGVLRNGMNLLHIPSFYVLVILGVILISVI
HHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
YFDSLMKNKMELSQ
HHHHHHHHHHHCCC
>Mature Secondary Structure
MRWNNFNKLKIQPIWFFVLILIVFFSSTSEYFFEFSNFKNIFIQTSTIGLIALGLTFVMI
CCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEEECHHHHHHHHHEEEEE
NGNIDLSVGSMVALSASITIGLQGYGLGFSIFAALLAGVLFGALNGIIVWKTGVDSFIVT
CCCEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHH
LGAMIGIRGVVFIYTEEQSFYALDFAFSDFGSSSLLGIPSLVLIFLFFSWLMHFILSRTI
HHHHHHHCEEEEEEECCCCEEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HGRNMLAIGGSRTASLNAGMKIGRHLMINFMICGFLAALAGITLSSQMGASTPNLGRDFE
CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHH
LWAITAVVLGGTHLKGGSGSIIGTLGGVIAIGVLRNGMNLLHIPSFYVLVILGVILISVI
HHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHH
YFDSLMKNKMELSQ
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]