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The map label for this gene is ycjC [C]

Identifier: 119946356

GI number: 119946356

Start: 3345370

End: 3345996

Strand: Reverse

Name: ycjC [C]

Synonym: Ping_2727

Alternate gene names: 119946356

Gene position: 3345996-3345370 (Counterclockwise)

Preceding gene: 119946359

Following gene: 119946355

Centisome position: 73.38

GC content: 43.38

Gene sequence:

>627_bases
ATGACTGATCTGAATGAACAAGATATTTATCCGTCAATGAAAATTTCTAACGATCGGGGATCAGACAAAATAGAGCCCGT
TAAACTCGGAGAGCGTTTAAAAGAAATTCGCAAGTCATTCGGTTTGACGCTGGAAGAAGCCAGCAAGAAAACTGGACTAG
CACGTTCTACGTTATCTAAAATAGAAAATGAACAGATATCACCAACCTTTCAGGCAATGCAGAAATTGACTCGGGGTTTA
CAGATAGATCTTCCGCAGCTTTTTGCGCCGCCCAAACAGGTCAGTGCGACCGGTCGCCGTGACATTACGCGTAATAACGA
GGGCAAGGCGCATCCGACTTCAACCTATGAACATGAATTATTGGCCACGCAGTTAACCAATAAAAAAATGATGCCCTTCA
AGTCGCGGGTCAGGGCGCGTGATTTTTCGGATTATTCGGATTGGATCCGCCACGCCGGAGATGAATTTTTATTAGTATTA
AGTGGTGATATAACCTTTTTTTCAGAATTTTATGAACCCGTCACGTTAAATGAAGGCGATTCGGTCTACTACGATGCGAA
TATGGGGCACATGCTTATTTCCAGTAGCGAAGAAGATGCTTTAATCCTTTGGGTGACCGCTTCATAA

Upstream 100 bases:

>100_bases
AAAGGAAACTTTTTCTCTTTTATGAGATCAGGATCCTGTTTTTTCCTGTGCGCTTTTATTTTTGATGTTTACTATATAGC
AAGAGAAAAGGAGAACAGTG

Downstream 100 bases:

>100_bases
ACAGAACTGACGCTGCACCATAAGTTGAAAAATAACCACCAAAACGATTGTCTCCATCTGACAATTAAATGAACCAGCCG
CAACTATTGCGCAATATGGA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator HTH_3 Family; Cupin 2 Conserved Barrel Domain Protein; Transcriptional Regulator Protein; XRE Family-Like Protein; Helix-Turn-Helix Family; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Transcription Regulator Protein; Transcriptional Regulator MerR Family; MerR Family Transcriptional Regulator; Transcriptional Regulator Xre Family; Transcription Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Epoxidase; Transcriptional Regulator Merr Family; HTH_3family Transcriptional Regulator; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTDLNEQDIYPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPTFQAMQKLTRGL
QIDLPQLFAPPKQVSATGRRDITRNNEGKAHPTSTYEHELLATQLTNKKMMPFKSRVRARDFSDYSDWIRHAGDEFLLVL
SGDITFFSEFYEPVTLNEGDSVYYDANMGHMLISSSEEDALILWVTAS

Sequences:

>Translated_208_residues
MTDLNEQDIYPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPTFQAMQKLTRGL
QIDLPQLFAPPKQVSATGRRDITRNNEGKAHPTSTYEHELLATQLTNKKMMPFKSRVRARDFSDYSDWIRHAGDEFLLVL
SGDITFFSEFYEPVTLNEGDSVYYDANMGHMLISSSEEDALILWVTAS
>Mature_207_residues
TDLNEQDIYPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPTFQAMQKLTRGLQ
IDLPQLFAPPKQVSATGRRDITRNNEGKAHPTSTYEHELLATQLTNKKMMPFKSRVRARDFSDYSDWIRHAGDEFLLVLS
GDITFFSEFYEPVTLNEGDSVYYDANMGHMLISSSEEDALILWVTAS

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23615; Mature: 23484

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLNEQDIYPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSK
CCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IENEQISPTFQAMQKLTRGLQIDLPQLFAPPKQVSATGRRDITRNNEGKAHPTSTYEHEL
HCCCCCCHHHHHHHHHHCCCEECCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
LATQLTNKKMMPFKSRVRARDFSDYSDWIRHAGDEFLLVLSGDITFFSEFYEPVTLNEGD
HHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCHHHHHHHCCCEEECCCC
SVYYDANMGHMLISSSEEDALILWVTAS
EEEEECCCCEEEEECCCCCEEEEEEECC
>Mature Secondary Structure 
TDLNEQDIYPSMKISNDRGSDKIEPVKLGERLKEIRKSFGLTLEEASKKTGLARSTLSK
CCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IENEQISPTFQAMQKLTRGLQIDLPQLFAPPKQVSATGRRDITRNNEGKAHPTSTYEHEL
HCCCCCCHHHHHHHHHHCCCEECCHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHH
LATQLTNKKMMPFKSRVRARDFSDYSDWIRHAGDEFLLVLSGDITFFSEFYEPVTLNEGD
HHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEEEEEEECCHHHHHHHCCCEEECCCC
SVYYDANMGHMLISSSEEDALILWVTAS
EEEEECCCCEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA