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The map label for this gene is ycfS [H]

Identifier: 119946260

GI number: 119946260

Start: 3216058

End: 3217026

Strand: Direct

Name: ycfS [H]

Synonym: Ping_2622

Alternate gene names: 119946260

Gene position: 3216058-3217026 (Clockwise)

Preceding gene: 119946253

Following gene: 119946262

Centisome position: 70.53

GC content: 40.25

Gene sequence:

>969_bases
ATGTTTGTGTACTCTAATTTATTATCAAATGAAATAATAAATTATCATTATTTCAAAAAGCACAGCATCATACTCAGCTT
AATGATGCTTTGCTTTATGCTAAATCCTGTTGCTGTGCAGGCAGAGGGCTACCCTTTGCCACAGGATGGATCACGGTTAA
TTGGTATACAGCAAGAATATAAAGTTCAGCAGGGAGATACCCTGAATGCTATTACTAAGCTTTATAATGTCGGTCTAATT
GCACTAATGGAAGCTAATCCCGGGGTAGATCCTTTTTTGCCCACCCCAGGAAAAATACTGCAAATTCCAAACCGGATGTT
ATTACCAGACGTTTCCCATAAAGGCATCGTTATTAATCTGCCCGAACTAAGATTATATTATTTCCCGAAAGGGAAACAGG
AAGTTCATATTTTCCCCATTGGTATTGGCCGCATTGGCCGCTCAACGCCTACTATGGAAACCACTGTCAGGATGAAAATA
AAACATCCAAGTTGGACGCCAACGACACAGAGCAGAGCAGAGCATTTCCAAGCAACAGGTAAACATTTACCCTCGGTGGT
AAAAGCAGGAAAAGATAACCCGCTTGGTGATTATGCACTGCAGCTCGCATATGGAAACTATGAATATTTGATCCACGGCA
CCAATAAAGATTTTGGCATTGGCATGCGGGTCAGTGCGGGTTGCATTCGCTTGAATCCCGATGACATTAGTTGGTTATTT
CAGCAAGTGTCGACCAACGAATCTGTTCGTATAATCAATCAACCGATTAAGATCGCATCGGAGCCAAATGGTCAAAAGAT
GCTTGAAGTTCATTCTCCAATATCAAGAAGTGACGATGACACTGAATTTAGTTTATATTGGACAAAAGAAGTGATTAAAT
TTAACAATCAAGAGGTAGTTGATAATGATGAGATGACAGAAGCCTTGTTATTACATCAGGGAATACCGGTCGTTATAGAG
TCCGAATAA

Upstream 100 bases:

>100_bases
CCTAATGAGTAAAATGGGTATAAGTATAAAATAGAAGCTGTTCTCAATTTTTGTATTTCAAGTAATTTAGGTCTAATCCC
AACCAGTATAAGGTTTCACT

Downstream 100 bases:

>100_bases
TAAAAAAGTGGGTTAACACCCACTTTTTTTATTGTTTTTTAACGCATTATTTTTTATAAGAAGTAGCAATATTATCAATA
CGTGAATTTGCACGTTCTGC

Product: peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MFVYSNLLSNEIINYHYFKKHSIILSLMMLCFMLNPVAVQAEGYPLPQDGSRLIGIQQEYKVQQGDTLNAITKLYNVGLI
ALMEANPGVDPFLPTPGKILQIPNRMLLPDVSHKGIVINLPELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKI
KHPSWTPTTQSRAEHFQATGKHLPSVVKAGKDNPLGDYALQLAYGNYEYLIHGTNKDFGIGMRVSAGCIRLNPDDISWLF
QQVSTNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWTKEVIKFNNQEVVDNDEMTEALLLHQGIPVVIE
SE

Sequences:

>Translated_322_residues
MFVYSNLLSNEIINYHYFKKHSIILSLMMLCFMLNPVAVQAEGYPLPQDGSRLIGIQQEYKVQQGDTLNAITKLYNVGLI
ALMEANPGVDPFLPTPGKILQIPNRMLLPDVSHKGIVINLPELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKI
KHPSWTPTTQSRAEHFQATGKHLPSVVKAGKDNPLGDYALQLAYGNYEYLIHGTNKDFGIGMRVSAGCIRLNPDDISWLF
QQVSTNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWTKEVIKFNNQEVVDNDEMTEALLLHQGIPVVIE
SE
>Mature_322_residues
MFVYSNLLSNEIINYHYFKKHSIILSLMMLCFMLNPVAVQAEGYPLPQDGSRLIGIQQEYKVQQGDTLNAITKLYNVGLI
ALMEANPGVDPFLPTPGKILQIPNRMLLPDVSHKGIVINLPELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKI
KHPSWTPTTQSRAEHFQATGKHLPSVVKAGKDNPLGDYALQLAYGNYEYLIHGTNKDFGIGMRVSAGCIRLNPDDISWLF
QQVSTNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWTKEVIKFNNQEVVDNDEMTEALLLHQGIPVVIE
SE

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=282, Percent_Identity=49.290780141844, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1787968, Length=305, Percent_Identity=43.6065573770492, Blast_Score=254, Evalue=4e-69,
Organism=Escherichia coli, GI1787040, Length=281, Percent_Identity=46.6192170818505, Blast_Score=245, Evalue=2e-66,
Organism=Escherichia coli, GI1788299, Length=311, Percent_Identity=43.7299035369775, Blast_Score=238, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 36320; Mature: 36320

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVYSNLLSNEIINYHYFKKHSIILSLMMLCFMLNPVAVQAEGYPLPQDGSRLIGIQQEY
CEEEHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCHHHH
KVQQGDTLNAITKLYNVGLIALMEANPGVDPFLPTPGKILQIPNRMLLPDVSHKGIVINL
EECCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEC
PELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKIKHPSWTPTTQSRAEHFQATG
CCEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
KHLPSVVKAGKDNPLGDYALQLAYGNYEYLIHGTNKDFGIGMRVSAGCIRLNPDDISWLF
HHHHHHHHCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCEEEECCHHHHHHH
QQVSTNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWTKEVIKFNNQEVV
HHHCCCCCEEEEECCEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEHHHCCCCEEC
DNDEMTEALLLHQGIPVVIESE
CCHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MFVYSNLLSNEIINYHYFKKHSIILSLMMLCFMLNPVAVQAEGYPLPQDGSRLIGIQQEY
CEEEHHHHHHHHHEEEEHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCHHHH
KVQQGDTLNAITKLYNVGLIALMEANPGVDPFLPTPGKILQIPNRMLLPDVSHKGIVINL
EECCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCCCEEEEC
PELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKIKHPSWTPTTQSRAEHFQATG
CCEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
KHLPSVVKAGKDNPLGDYALQLAYGNYEYLIHGTNKDFGIGMRVSAGCIRLNPDDISWLF
HHHHHHHHCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCEEEECCHHHHHHH
QQVSTNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWTKEVIKFNNQEVV
HHHCCCCCEEEEECCEEECCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEHHHCCCCEEC
DNDEMTEALLLHQGIPVVIESE
CCHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]