BacMap

Definition	Psychromonas ingrahamii 37, complete genome.
Accession	NC_008709
Length	4,559,598

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The map label for this gene is fadE10 [H]

Identifier: 119946241

GI number: 119946241

Start: 3194318

End: 3196219

Strand: Reverse

Name: fadE10 [H]

Synonym: Ping_2603

Alternate gene names: 119946241

Gene position: 3196219-3194318 (Counterclockwise)

Preceding gene: 119946242

Following gene: 119946240

Centisome position: 70.1

GC content: 41.32

Gene sequence:

>1902_bases
ATGCATAAAGTAAATAATGAACCCGAAGAAGAGTCTGTGATAGATACCTCTAAAATGAATGCCGAGAAGGCCTCAACAAT
GAGGATAACCGAAGCTGCGCGAGAAGCGGCCGCGGATCAAAAAAGTTTCGCAGGGCAGCTTTTTATGGGCAGTTTCCAAC
CGGACTTATTATTCCCTTTTCCGGTCCAGAGTCTTGAAGATAAAATAATAGGTGATCATTTAGTTGAGAAAGTCTGCCAT
TTTCTTAAACAAAACCTGGATCCGGAAAAGGTAGATGCGACCCAAACTATTCCTACCGATGTGATTGAAGGGATGGCAGA
ACTAGGGCTTTTTGCCATGAAAGTACCTAAAGAATATAATGGATTAGGCCTTTCTCAAGTTAATTATAACCGTGTCATGA
TAGCCATCTCCTCTTATTGCGGCAGTACCGCAGTATTGCTCAGTGCTCATCAATCTATTGGTGTGCCGCAACCGTTAAAA
ATGTTTGGTACTAAAGCGCAAAAAGAAAAATACCTGCCTTTATTTAGAGAAGGAAAAATATCAGCTTTTGCCCTTACCGA
ACCCGAAGTAGGGTCTGATCCCGGTAAAATGGAAACCACTGCAACCCTTAGCGATGATGGTGAACATTATCTTATAAATG
GTGTAAAACTCTGGTGTACCAACGGCTTGATTGCAGATGTATTGGTGGTGATGGCCCGGACCGAGGATAAAATAGCTAAC
AATGGCGAGCAAATAAAACAAATTACTGCTTTTATTGTTGAAAAGGAGATGCCAGGTATTGAAATAAAACATCGCTGCGA
CTTTATGGGGATAAGAGGGATTCAAAACGGTGTAATAAAATTTACTAATGTAAAAGTACCGCTAGAAAATATTATTTTAG
GTAAAGGCAAAGGATTAAAGCTTGCATTGGCGACACTCAACACCGGGCGTTTAACCCTGCCTGCAGCCGCTACCGGTATG
TCTAAGTATTGCTTAGCTGTCGCCCGGGAGTGGGGTAACGAAAGGGTGCAGTGGGGACTGCCGATTGGTAAACATGAGGC
GGGATCTAAAAAAATAGCTTTTATTGCTGCCAGCACTTTTGCGATGGAGGCGGTTACTTATTTAACCTCGCATATGGCCG
ATGATCCTAAATTAGATATTAGAATTGAAGCTGCCATGGCTAAACTATTTTGCTCAGAACTTTCCTGGAAAGTGATCGAT
GAGACGATGCAGTTTAGAGGCGGACGAGGTTATGAGAAAGCTTCATCACTTAAGGCCAGAGGAGAAAAAGGCTATCCTAT
CGAAAGAATGATGCGCGATACACGTATTAACCGAATTATCGAAGGTACAACGGATATTATGAAGCTGTTTTTAGCGCGTG
AAGCGATGGATCCGCATTTAAAAGTCGCCGCTGAAATATTAAAAAAGAATGTTTCCATGGAAAATAAACTCCATGCAGGC
GTTAAACTTGCGGCTTTCTATGGCAAATGGTACCCCACTCAGTGGCTGAATTCTTCGCTTTGGGCTAGCCATACTGATCT
AGGAGAATTGTCCAAACATTTCTCCTACGTAGAAACGACATCCCACAAACTTGCGCGCACGATTTTTCATTATATGGGGC
TTTATCAGGACAGGTTAGAGCGTAAACAAAATATTCTCGGCATTTTAATGGAAATTGGTACTGAGCTGTTTGCTATGGCC
ACCACTTGCTCCTATGCAAAATTTAAAATGGATGACGATCCTAGCGACACGACACCTAAGTATTTAGCGGATGTTTTCTG
CTTAAATGCAAAAAGAAAAATATCCCGCTTATTTGATGATTTAACTGATAATGATGATGAAAAAGAAAATAAATTAGCGA
AAAGTGTCTTAAAAGGCGATCTAAAGTGGCTGGAAAAAGGCATTATTTGGTCTGAAGATTAA

Upstream 100 bases:

>100_bases
CCCGCTGAGCAATTAATAGATAAAGCAAAAAACGGCGGGAAATTTTATAATTAGCACCCGACAGCAAGCGTGGTTTGGAT
ATCCGTAGAAGGAGTTAATG

Downstream 100 bases:

>100_bases
TTATCTTTTATTAAAAACTCAAATATTAAAAACTCAAAATAAGTACTGTGTTTTGAGTTTTTTTATACTGAGTACTTTTA
AATTATTACTCTATAGGATT

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MHKVNNEPEEESVIDTSKMNAEKASTMRITEAAREAAADQKSFAGQLFMGSFQPDLLFPFPVQSLEDKIIGDHLVEKVCH
FLKQNLDPEKVDATQTIPTDVIEGMAELGLFAMKVPKEYNGLGLSQVNYNRVMIAISSYCGSTAVLLSAHQSIGVPQPLK
MFGTKAQKEKYLPLFREGKISAFALTEPEVGSDPGKMETTATLSDDGEHYLINGVKLWCTNGLIADVLVVMARTEDKIAN
NGEQIKQITAFIVEKEMPGIEIKHRCDFMGIRGIQNGVIKFTNVKVPLENIILGKGKGLKLALATLNTGRLTLPAAATGM
SKYCLAVAREWGNERVQWGLPIGKHEAGSKKIAFIAASTFAMEAVTYLTSHMADDPKLDIRIEAAMAKLFCSELSWKVID
ETMQFRGGRGYEKASSLKARGEKGYPIERMMRDTRINRIIEGTTDIMKLFLAREAMDPHLKVAAEILKKNVSMENKLHAG
VKLAAFYGKWYPTQWLNSSLWASHTDLGELSKHFSYVETTSHKLARTIFHYMGLYQDRLERKQNILGILMEIGTELFAMA
TTCSYAKFKMDDDPSDTTPKYLADVFCLNAKRKISRLFDDLTDNDDEKENKLAKSVLKGDLKWLEKGIIWSED

Sequences:

>Translated_633_residues
MHKVNNEPEEESVIDTSKMNAEKASTMRITEAAREAAADQKSFAGQLFMGSFQPDLLFPFPVQSLEDKIIGDHLVEKVCH
FLKQNLDPEKVDATQTIPTDVIEGMAELGLFAMKVPKEYNGLGLSQVNYNRVMIAISSYCGSTAVLLSAHQSIGVPQPLK
MFGTKAQKEKYLPLFREGKISAFALTEPEVGSDPGKMETTATLSDDGEHYLINGVKLWCTNGLIADVLVVMARTEDKIAN
NGEQIKQITAFIVEKEMPGIEIKHRCDFMGIRGIQNGVIKFTNVKVPLENIILGKGKGLKLALATLNTGRLTLPAAATGM
SKYCLAVAREWGNERVQWGLPIGKHEAGSKKIAFIAASTFAMEAVTYLTSHMADDPKLDIRIEAAMAKLFCSELSWKVID
ETMQFRGGRGYEKASSLKARGEKGYPIERMMRDTRINRIIEGTTDIMKLFLAREAMDPHLKVAAEILKKNVSMENKLHAG
VKLAAFYGKWYPTQWLNSSLWASHTDLGELSKHFSYVETTSHKLARTIFHYMGLYQDRLERKQNILGILMEIGTELFAMA
TTCSYAKFKMDDDPSDTTPKYLADVFCLNAKRKISRLFDDLTDNDDEKENKLAKSVLKGDLKWLEKGIIWSED
>Mature_633_residues
MHKVNNEPEEESVIDTSKMNAEKASTMRITEAAREAAADQKSFAGQLFMGSFQPDLLFPFPVQSLEDKIIGDHLVEKVCH
FLKQNLDPEKVDATQTIPTDVIEGMAELGLFAMKVPKEYNGLGLSQVNYNRVMIAISSYCGSTAVLLSAHQSIGVPQPLK
MFGTKAQKEKYLPLFREGKISAFALTEPEVGSDPGKMETTATLSDDGEHYLINGVKLWCTNGLIADVLVVMARTEDKIAN
NGEQIKQITAFIVEKEMPGIEIKHRCDFMGIRGIQNGVIKFTNVKVPLENIILGKGKGLKLALATLNTGRLTLPAAATGM
SKYCLAVAREWGNERVQWGLPIGKHEAGSKKIAFIAASTFAMEAVTYLTSHMADDPKLDIRIEAAMAKLFCSELSWKVID
ETMQFRGGRGYEKASSLKARGEKGYPIERMMRDTRINRIIEGTTDIMKLFLAREAMDPHLKVAAEILKKNVSMENKLHAG
VKLAAFYGKWYPTQWLNSSLWASHTDLGELSKHFSYVETTSHKLARTIFHYMGLYQDRLERKQNILGILMEIGTELFAMA
TTCSYAKFKMDDDPSDTTPKYLADVFCLNAKRKISRLFDDLTDNDDEKENKLAKSVLKGDLKWLEKGIIWSED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI21361497, Length=591, Percent_Identity=32.48730964467, Blast_Score=293, Evalue=3e-79,
Organism=Homo sapiens, GI4557235, Length=566, Percent_Identity=33.2155477031802, Blast_Score=276, Evalue=4e-74,
Organism=Homo sapiens, GI76496475, Length=564, Percent_Identity=33.3333333333333, Blast_Score=276, Evalue=6e-74,
Organism=Homo sapiens, GI4557233, Length=393, Percent_Identity=33.8422391857506, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI4501859, Length=388, Percent_Identity=28.6082474226804, Blast_Score=171, Evalue=2e-42,
Organism=Homo sapiens, GI187960098, Length=384, Percent_Identity=30.7291666666667, Blast_Score=164, Evalue=3e-40,
Organism=Homo sapiens, GI4557231, Length=384, Percent_Identity=30.7291666666667, Blast_Score=164, Evalue=3e-40,
Organism=Homo sapiens, GI226958412, Length=386, Percent_Identity=29.2746113989637, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI226958414, Length=350, Percent_Identity=30.5714285714286, Blast_Score=157, Evalue=3e-38,
Organism=Homo sapiens, GI7656849, Length=366, Percent_Identity=26.5027322404372, Blast_Score=155, Evalue=8e-38,
Organism=Homo sapiens, GI4503943, Length=412, Percent_Identity=27.6699029126214, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI7669494, Length=369, Percent_Identity=28.1842818428184, Blast_Score=134, Evalue=3e-31,
Organism=Homo sapiens, GI48976061, Length=423, Percent_Identity=26.9503546099291, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI211971008, Length=423, Percent_Identity=26.9503546099291, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI4501857, Length=386, Percent_Identity=24.6113989637306, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI38505218, Length=402, Percent_Identity=25.3731343283582, Blast_Score=108, Evalue=2e-23,
Organism=Escherichia coli, GI87081702, Length=633, Percent_Identity=25.9083728278041, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI87081958, Length=370, Percent_Identity=28.1081081081081, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1786223, Length=377, Percent_Identity=25.9946949602122, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71985184, Length=416, Percent_Identity=37.0192307692308, Blast_Score=257, Evalue=1e-68,
Organism=Caenorhabditis elegans, GI71985192, Length=353, Percent_Identity=36.8271954674221, Blast_Score=211, Evalue=9e-55,
Organism=Caenorhabditis elegans, GI17534899, Length=376, Percent_Identity=30.3191489361702, Blast_Score=164, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17569725, Length=376, Percent_Identity=30.0531914893617, Blast_Score=161, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17506239, Length=390, Percent_Identity=30.2564102564103, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17508101, Length=390, Percent_Identity=28.974358974359, Blast_Score=159, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI17538396, Length=350, Percent_Identity=29.1428571428571, Blast_Score=158, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI17533517, Length=390, Percent_Identity=26.6666666666667, Blast_Score=150, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17570075, Length=365, Percent_Identity=29.3150684931507, Blast_Score=149, Evalue=3e-36,
Organism=Caenorhabditis elegans, GI71990804, Length=302, Percent_Identity=32.7814569536424, Blast_Score=141, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17534353, Length=395, Percent_Identity=27.8481012658228, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI32563615, Length=228, Percent_Identity=32.8947368421053, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71982178, Length=282, Percent_Identity=28.7234042553192, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17551932, Length=393, Percent_Identity=27.4809160305344, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17505929, Length=414, Percent_Identity=25.6038647342995, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562446, Length=338, Percent_Identity=24.8520710059172, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17540912, Length=462, Percent_Identity=21.8614718614719, Blast_Score=88, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17531909, Length=250, Percent_Identity=26.4, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281363737, Length=540, Percent_Identity=32.5925925925926, Blast_Score=276, Evalue=4e-74,
Organism=Drosophila melanogaster, GI21356377, Length=386, Percent_Identity=35.2331606217617, Blast_Score=202, Evalue=8e-52,
Organism=Drosophila melanogaster, GI24660351, Length=392, Percent_Identity=30.6122448979592, Blast_Score=170, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24666513, Length=431, Percent_Identity=29.2343387470998, Blast_Score=165, Evalue=9e-41,
Organism=Drosophila melanogaster, GI24646207, Length=385, Percent_Identity=29.3506493506493, Blast_Score=158, Evalue=9e-39,
Organism=Drosophila melanogaster, GI21355753, Length=356, Percent_Identity=29.4943820224719, Blast_Score=146, Evalue=4e-35,
Organism=Drosophila melanogaster, GI19920834, Length=362, Percent_Identity=28.7292817679558, Blast_Score=119, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 70712; Mature: 70712

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKVNNEPEEESVIDTSKMNAEKASTMRITEAAREAAADQKSFAGQLFMGSFQPDLLFPF
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCC
PVQSLEDKIIGDHLVEKVCHFLKQNLDPEKVDATQTIPTDVIEGMAELGLFAMKVPKEYN
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCHHHEECCCCCC
GLGLSQVNYNRVMIAISSYCGSTAVLLSAHQSIGVPQPLKMFGTKAQKEKYLPLFREGKI
CCCCCEECCCEEEEEEEHHCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCCCCCCCE
SAFALTEPEVGSDPGKMETTATLSDDGEHYLINGVKLWCTNGLIADVLVVMARTEDKIAN
EEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECEEEEECCCHHHHHHHHHHHCHHHHHC
NGEQIKQITAFIVEKEMPGIEIKHRCDFMGIRGIQNGVIKFTNVKVPLENIILGKGKGLK
CHHHHHHHHHHHHHCCCCCCEEECCCCEEECCCCCCCCEEEEEEECCHHHEEECCCCCCE
LALATLNTGRLTLPAAATGMSKYCLAVAREWGNERVQWGLPIGKHEAGSKKIAFIAASTF
EEEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEHHHH
AMEAVTYLTSHMADDPKLDIRIEAAMAKLFCSELSWKVIDETMQFRGGRGYEKASSLKAR
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GEKGYPIERMMRDTRINRIIEGTTDIMKLFLAREAMDPHLKVAAEILKKNVSMENKLHAG
CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCC
VKLAAFYGKWYPTQWLNSSLWASHTDLGELSKHFSYVETTSHKLARTIFHYMGLYQDRLE
EEEEEHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKQNILGILMEIGTELFAMATTCSYAKFKMDDDPSDTTPKYLADVFCLNAKRKISRLFDD
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
LTDNDDEKENKLAKSVLKGDLKWLEKGIIWSED
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHKVNNEPEEESVIDTSKMNAEKASTMRITEAAREAAADQKSFAGQLFMGSFQPDLLFPF
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCCC
PVQSLEDKIIGDHLVEKVCHFLKQNLDPEKVDATQTIPTDVIEGMAELGLFAMKVPKEYN
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCHHHEECCCCCC
GLGLSQVNYNRVMIAISSYCGSTAVLLSAHQSIGVPQPLKMFGTKAQKEKYLPLFREGKI
CCCCCEECCCEEEEEEEHHCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCCCCCCCE
SAFALTEPEVGSDPGKMETTATLSDDGEHYLINGVKLWCTNGLIADVLVVMARTEDKIAN
EEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECEEEEECCCHHHHHHHHHHHCHHHHHC
NGEQIKQITAFIVEKEMPGIEIKHRCDFMGIRGIQNGVIKFTNVKVPLENIILGKGKGLK
CHHHHHHHHHHHHHCCCCCCEEECCCCEEECCCCCCCCEEEEEEECCHHHEEECCCCCCE
LALATLNTGRLTLPAAATGMSKYCLAVAREWGNERVQWGLPIGKHEAGSKKIAFIAASTF
EEEEEECCCCEECCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEHHHH
AMEAVTYLTSHMADDPKLDIRIEAAMAKLFCSELSWKVIDETMQFRGGRGYEKASSLKAR
HHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
GEKGYPIERMMRDTRINRIIEGTTDIMKLFLAREAMDPHLKVAAEILKKNVSMENKLHAG
CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCC
VKLAAFYGKWYPTQWLNSSLWASHTDLGELSKHFSYVETTSHKLARTIFHYMGLYQDRLE
EEEEEHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKQNILGILMEIGTELFAMATTCSYAKFKMDDDPSDTTPKYLADVFCLNAKRKISRLFDD
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
LTDNDDEKENKLAKSVLKGDLKWLEKGIIWSED
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]