Click here to switch to the map view.

The map label for this gene is agmR [H]

Identifier: 119946176

GI number: 119946176

Start: 3098503

End: 3099153

Strand: Direct

Name: agmR [H]

Synonym: Ping_2536

Alternate gene names: 119946176

Gene position: 3098503-3099153 (Clockwise)

Preceding gene: 119946175

Following gene: 119946185

Centisome position: 67.96

GC content: 40.71

Gene sequence:

>651_bases
ATGTATAAAATTTTAATTGCAGATGATCATCCTTTGTTTAGAGATGCGATTGCCAATATTATTGCTGAAAGCTTTAAGGC
ATCGACCATCGAGCAGACGGAAGATATTGACTCGACTCTTGAATTTGTTAAAGATAATGATGATCTTGACCTGATTCTTT
TAGATCTGAATATGCCGGGTATGTCCGGTCTGCAGGGATTATTAGCGCTGCGTAATGAGTGCCCGACAATACCTGTGGTG
ATTATTTCAGCAGAACGGGATAAACAGACAATACTGCAGACACTCTCCTACGGTGCAGTCGGCTTTATTGCTAAATCTTC
TTCTAAAACGTGTATTGTTGAAGCCCTTGAAAGTGTTTTTGCGGGTAATGTCTGCCTGCCGGCTGATATTATGCGTTTGC
CGGAAATCCCAAAACCGAATAATGAATTTGTTGTTTTACCGGAAAAAATTGCATCGCTCACACGCCGCGAACTGATGGTA
TTAAAAAACCTTTCTCAGGGAGAAGCCAATAAACAGATTGCTGTTAATCTGTTTATTTCAGAGGCAACAGTTAAAAGCCA
TGTTTCCTCCATTCTGAAAAAACTGGGCGCTTCTAACCGCGTTAAAGTAGTACTCGGTTGCGCTGATATAGATTTTAGTC
AGCACATGTAA

Upstream 100 bases:

>100_bases
TTAAAGGGCGTCAAACTTCACATGGTTTAAGTGCGCTTGCCGGTACGCGCAAAAAAGCTGTTAAAGTGATAGCGTTATTC
ACTACGCAGAGGCCAGTCGT

Downstream 100 bases:

>100_bases
AGCTTGAAGGCAGGATGGCTATAAGGCCGACAGCTAACGGCTGACAGCCAACAACCGACCACCGACAGCTAACAGCCGAC
CGCCAACAACCGATTCCTAT

Product: two component transcriptional regulator, LuxR family protein

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MYKILIADDHPLFRDAIANIIAESFKASTIEQTEDIDSTLEFVKDNDDLDLILLDLNMPGMSGLQGLLALRNECPTIPVV
IISAERDKQTILQTLSYGAVGFIAKSSSKTCIVEALESVFAGNVCLPADIMRLPEIPKPNNEFVVLPEKIASLTRRELMV
LKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVVLGCADIDFSQHM

Sequences:

>Translated_216_residues
MYKILIADDHPLFRDAIANIIAESFKASTIEQTEDIDSTLEFVKDNDDLDLILLDLNMPGMSGLQGLLALRNECPTIPVV
IISAERDKQTILQTLSYGAVGFIAKSSSKTCIVEALESVFAGNVCLPADIMRLPEIPKPNNEFVVLPEKIASLTRRELMV
LKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVVLGCADIDFSQHM
>Mature_216_residues
MYKILIADDHPLFRDAIANIIAESFKASTIEQTEDIDSTLEFVKDNDDLDLILLDLNMPGMSGLQGLLALRNECPTIPVV
IISAERDKQTILQTLSYGAVGFIAKSSSKTCIVEALESVFAGNVCLPADIMRLPEIPKPNNEFVVLPEKIASLTRRELMV
LKNLSQGEANKQIAVNLFISEATVKSHVSSILKKLGASNRVKVVLGCADIDFSQHM

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=200, Percent_Identity=33.5, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1786747, Length=201, Percent_Identity=25.3731343283582, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788222, Length=198, Percent_Identity=24.2424242424242, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788712, Length=193, Percent_Identity=28.4974093264249, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787473, Length=202, Percent_Identity=32.1782178217822, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1790102, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23641; Mature: 23641

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKILIADDHPLFRDAIANIIAESFKASTIEQTEDIDSTLEFVKDNDDLDLILLDLNMPG
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
MSGLQGLLALRNECPTIPVVIISAERDKQTILQTLSYGAVGFIAKSSSKTCIVEALESVF
HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
AGNVCLPADIMRLPEIPKPNNEFVVLPEKIASLTRRELMVLKNLSQGEANKQIAVNLFIS
CCCCCCCHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE
EATVKSHVSSILKKLGASNRVKVVLGCADIDFSQHM
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHCCC
>Mature Secondary Structure
MYKILIADDHPLFRDAIANIIAESFKASTIEQTEDIDSTLEFVKDNDDLDLILLDLNMPG
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
MSGLQGLLALRNECPTIPVVIISAERDKQTILQTLSYGAVGFIAKSSSKTCIVEALESVF
HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
AGNVCLPADIMRLPEIPKPNNEFVVLPEKIASLTRRELMVLKNLSQGEANKQIAVNLFIS
CCCCCCCHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE
EATVKSHVSSILKKLGASNRVKVVLGCADIDFSQHM
HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]