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The map label for this gene is rbgA [H]

Identifier: 119946103

GI number: 119946103

Start: 2999222

End: 3000160

Strand: Direct

Name: rbgA [H]

Synonym: Ping_2453

Alternate gene names: 119946103

Gene position: 2999222-3000160 (Clockwise)

Preceding gene: 119946102

Following gene: 119946105

Centisome position: 65.78

GC content: 42.28

Gene sequence:

>939_bases
ATGAGTAAAGCTAATATCCAATGGTTTCCCGGGCACATGCACAAAGCACACAAGCAAATCAAAGAGGTCTTGCCTCAGGT
TGATATAATTATTGAAGTCGTTGATGCACGCATTCCCTATAGCAGTGAAAACCCGCTCATTGCTCATATCCGCGAAAATA
CCCCCTGTATTAAAGTACTCAATAAATCAGATTTAGCCGATCCTGAGATTACGGCACAGTGGATCACTTATTTAGAGCAG
GAGCAGGGTATAAAAGCACTTGCCATTACCACCAGCAAACCTGAGCAAGTACATCAAATAACCAAACTGTGTGAACAGAT
GTTACCCCATAAATTAGGCCAAGATAAACAGATTAGAGCCATGATCATGGGCATTCCAAATGTTGGAAAATCAACCATTA
TCAATATATTAGCAGATCGGATTATCGCAAAAACAGGTAACGAGCCCGCCGTCACTAAACAACAGCAGCGGATCCGCCTA
CCAAGCGGAATCATGCTTTCCGATACACCCGGGTTTTTATGGCCTAAAATCGAAAATGCAAATTCTGGATACCGTCTTGC
CGTTACCGGCGCCATCAAAGATACTGCAATTGAATATGAAGATATCGCTTATTATGCTGCTGAGTACCTGCTGGCGAATT
ATCCCGAACGTTTAAAAAAACGTTACGAACTGGAAACCTTGCCCGAGAGTGACCATGAATTAATGGAAGCTATTGCATTG
CGCCGAGGCTGTTTACGCGCCGGAGGTCATTTTGATATCTATAAAGTTTCCACCATTTTACTTAATGAATTAAGATCCGG
TGCACTAGGTCCCTTAAGTATTGAAACGCCGGAAATGGCAACAGTAGAAAAAGTGGCAGTGGCGGCGCTAATGGCTGAGC
AGGCAGAAAATAAAATAGAAAAGAAAAAATCTCGAAAACGTAACTATAAAAGTCGTTAA

Upstream 100 bases:

>100_bases
TCTTTCAGCAGGATCACTGTCGATCATTCCTACAATCACATTTAGTACCCCAAGAACCACCCCATTGGATACTATATAAA
ACAAAAGAGTTTAAAATCAA

Downstream 100 bases:

>100_bases
TTAAGATGAGATAATTAATTTGAGGGCCATAACGGCCCTTTTATCAGTTTGATTCAATCATATCTGACTGCCATTTGAAG
ACACCGTCAAACTGCTCACA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSKANIQWFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPCIKVLNKSDLADPEITAQWITYLEQ
EQGIKALAITTSKPEQVHQITKLCEQMLPHKLGQDKQIRAMIMGIPNVGKSTIINILADRIIAKTGNEPAVTKQQQRIRL
PSGIMLSDTPGFLWPKIENANSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKKRYELETLPESDHELMEAIAL
RRGCLRAGGHFDIYKVSTILLNELRSGALGPLSIETPEMATVEKVAVAALMAEQAENKIEKKKSRKRNYKSR

Sequences:

>Translated_312_residues
MSKANIQWFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPCIKVLNKSDLADPEITAQWITYLEQ
EQGIKALAITTSKPEQVHQITKLCEQMLPHKLGQDKQIRAMIMGIPNVGKSTIINILADRIIAKTGNEPAVTKQQQRIRL
PSGIMLSDTPGFLWPKIENANSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKKRYELETLPESDHELMEAIAL
RRGCLRAGGHFDIYKVSTILLNELRSGALGPLSIETPEMATVEKVAVAALMAEQAENKIEKKKSRKRNYKSR
>Mature_311_residues
SKANIQWFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPCIKVLNKSDLADPEITAQWITYLEQE
QGIKALAITTSKPEQVHQITKLCEQMLPHKLGQDKQIRAMIMGIPNVGKSTIINILADRIIAKTGNEPAVTKQQQRIRLP
SGIMLSDTPGFLWPKIENANSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKKRYELETLPESDHELMEAIALR
RGCLRAGGHFDIYKVSTILLNELRSGALGPLSIETPEMATVEKVAVAALMAEQAENKIEKKKSRKRNYKSR

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=293, Percent_Identity=31.3993174061433, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI7019419, Length=273, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI296317324, Length=310, Percent_Identity=25.1612903225806, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI9506611, Length=310, Percent_Identity=25.1612903225806, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI193211047, Length=222, Percent_Identity=31.981981981982, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71990926, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI32563985, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI32563983, Length=214, Percent_Identity=29.4392523364486, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17534827, Length=300, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25143545, Length=285, Percent_Identity=25.9649122807018, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115535155, Length=285, Percent_Identity=25.9649122807018, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=264, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=292, Percent_Identity=26.027397260274, Blast_Score=76, Evalue=6e-15,
Organism=Drosophila melanogaster, GI85815858, Length=308, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI19922460, Length=264, Percent_Identity=28.030303030303, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28572990, Length=307, Percent_Identity=26.7100977198697, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35144; Mature: 35013

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKANIQWFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPCIKVL
CCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEE
NKSDLADPEITAQWITYLEQEQGIKALAITTSKPEQVHQITKLCEQMLPHKLGQDKQIRA
CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHEEE
MIMGIPNVGKSTIINILADRIIAKTGNEPAVTKQQQRIRLPSGIMLSDTPGFLWPKIENA
HEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCC
NSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKKRYELETLPESDHELMEAIAL
CCCEEEEEEECHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHH
RRGCLRAGGHFDIYKVSTILLNELRSGALGPLSIETPEMATVEKVAVAALMAEQAENKIE
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKKSRKRNYKSR
HHHHHHCCCCCC
>Mature Secondary Structure 
SKANIQWFPGHMHKAHKQIKEVLPQVDIIIEVVDARIPYSSENPLIAHIRENTPCIKVL
CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEE
NKSDLADPEITAQWITYLEQEQGIKALAITTSKPEQVHQITKLCEQMLPHKLGQDKQIRA
CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCHHEEE
MIMGIPNVGKSTIINILADRIIAKTGNEPAVTKQQQRIRLPSGIMLSDTPGFLWPKIENA
HEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCC
NSGYRLAVTGAIKDTAIEYEDIAYYAAEYLLANYPERLKKRYELETLPESDHELMEAIAL
CCCEEEEEEECHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHH
RRGCLRAGGHFDIYKVSTILLNELRSGALGPLSIETPEMATVEKVAVAALMAEQAENKIE
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKKSRKRNYKSR
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]