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The map label for this gene is hupR1 [H]

Identifier: 119945998

GI number: 119945998

Start: 2845083

End: 2845559

Strand: Reverse

Name: hupR1 [H]

Synonym: Ping_2340

Alternate gene names: 119945998

Gene position: 2845559-2845083 (Counterclockwise)

Preceding gene: 119945999

Following gene: 119945996

Centisome position: 62.41

GC content: 35.43

Gene sequence:

>477_bases
ATGGAAAAAATTAATATTATTTGTGTTGATGATGAACGTGACGTCTTGGAATCGGTCAGCCGCGACCTCGATTATTTTAG
CGATATATTTAATATTGAAGAGTGTGAGTCTGCTTTTGAATGCTTAGCGCTATTAGAAGAGTTCGATGCACAGCAGAAAT
ATGTCGCCTTGATTATTTCTGATCATATTATGCCGGAAAAATCAGGGGTCGAGTTATTGACTGAAGTGGCAATGGATAAT
CGTTTTCTTGGCACGAAAAAATTACTGTTAACAGGCCTTGCAACACAAGCTGATACTATCGATGCAATCAATAACGCCAA
AATTGATAACTTTTTAGAAAAAGTGTGGGATCCTAAGCAGTTATTACAAATGGTAAAAAAGTTACTCACTGAGTATATTA
TTGAAAAAGGGATCGGTTATGAGGAATATATAGAAAAACTCGATGCGCCAACCTTATATCGATTATTAAAATCCTAA

Upstream 100 bases:

>100_bases
TTGGTATATCAGTCGCCTTTGCTATGTTATTCATTATGAATAAAGCCCATTTTATTGGCTAAGTCATTTTTTGTTAAGCA
ATTTAATTTGAGAAAGAAAA

Downstream 100 bases:

>100_bases
GCGCAAGCAAATCAACAGTGAATAACGCTGCATTTTAACGCTCTTTGTTGCAACGAATAACGCCACATTGCATGGCGCAG
CGCTTTATGAAAGTTCGAAT

Product: CheY-like chemotaxis protein, response regulator receiver

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MEKINIICVDDERDVLESVSRDLDYFSDIFNIEECESAFECLALLEEFDAQQKYVALIISDHIMPEKSGVELLTEVAMDN
RFLGTKKLLLTGLATQADTIDAINNAKIDNFLEKVWDPKQLLQMVKKLLTEYIIEKGIGYEEYIEKLDAPTLYRLLKS

Sequences:

>Translated_158_residues
MEKINIICVDDERDVLESVSRDLDYFSDIFNIEECESAFECLALLEEFDAQQKYVALIISDHIMPEKSGVELLTEVAMDN
RFLGTKKLLLTGLATQADTIDAINNAKIDNFLEKVWDPKQLLQMVKKLLTEYIIEKGIGYEEYIEKLDAPTLYRLLKS
>Mature_158_residues
MEKINIICVDDERDVLESVSRDLDYFSDIFNIEECESAFECLALLEEFDAQQKYVALIISDHIMPEKSGVELLTEVAMDN
RFLGTKKLLLTGLATQADTIDAINNAKIDNFLEKVWDPKQLLQMVKKLLTEYIIEKGIGYEEYIEKLDAPTLYRLLKS

Specific function: Probable member of the two-component regulatory system involved in the regulation of the [NiFe] hydrogenase activity. HupR1 is probably phosphorylated by the sensory component and then acts in conjunction with sigma-54 as a transcriptional activator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 18174; Mature: 18174

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKINIICVDDERDVLESVSRDLDYFSDIFNIEECESAFECLALLEEFDAQQKYVALIIS
CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DHIMPEKSGVELLTEVAMDNRFLGTKKLLLTGLATQADTIDAINNAKIDNFLEKVWDPKQ
HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
LLQMVKKLLTEYIIEKGIGYEEYIEKLDAPTLYRLLKS
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHC
>Mature Secondary Structure
MEKINIICVDDERDVLESVSRDLDYFSDIFNIEECESAFECLALLEEFDAQQKYVALIIS
CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
DHIMPEKSGVELLTEVAMDNRFLGTKKLLLTGLATQADTIDAINNAKIDNFLEKVWDPKQ
HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH
LLQMVKKLLTEYIIEKGIGYEEYIEKLDAPTLYRLLKS
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1885559; 8497190; 2007559 [H]