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The map label for this gene is rdgC

Identifier: 119945893

GI number: 119945893

Start: 2716495

End: 2717403

Strand: Direct

Name: rdgC

Synonym: Ping_2233

Alternate gene names: 119945893

Gene position: 2716495-2717403 (Clockwise)

Preceding gene: 119945885

Following gene: 119945894

Centisome position: 59.58

GC content: 41.36

Gene sequence:

>909_bases
ATGTTTTTCAAAAACCTACAAGTTTATCGTTTTACCCGCCCCCTTGAACAAGACATTGATACATTAGAAAGAAATCTTGA
AGAATTTAAATTTAAACCCTGTGGCAGCCAGGATATTTCGAAACTAGGCTGGGTCTTCCCGATGGGAAAATCAGGCTCAA
TGTATACTCACATTGCAGGCAAGCAAATTCTGATTTGCTTAAAAAAAGAGGAAAAGATGTTACCTGCAGGGGTCATTAAA
GATCAACTGAATGAACGCGTGGAAGCGATTGAACTTGAACAGGGCCGCGCACTGAAGAAAAAAGAAAAAGACAGTCTAAA
AGAAGAGATTGTCATGCAGTTGTTACCACGGGCATTTAGTCGTACTTCACAAACCTTTGCCTGGATCGATTCAGAATCAG
ATATGTTATATGTTGACGCATCCAGTACCCGTAAGGCCGAGGAGCTTATTTCATTACTGCGTAAAACATTAGGCAGTTTG
CCCATTGTCCCTATCCAGCTTAAAAACCAGGCAGATGTGATTATGACCGATTGGTTAACCGAGGGTAATATCCCCGCTAA
CTTTGCATTAGAAGATGAGGCCGAATTATGTTCGGCATTAGAAGGTGGCGGTATTATTCGCTGTAAACAGCAGGACTTAT
TATCCGATGAAATAAAAAACCATTTATCAGCTGATAAATTTGTGACTAAATTAGCCCTGTGCTGGGCTGACAGTATCTCA
TTTATTATTGGCGAAGAATTTGCGCTTAAACGCATTAAGTTTGCCGATGTATTGCAGGAACAAAATGAAGATATCGATAA
AGATGATTTTGCGGCTCGCTTCGATGCTGACTTTGCCCTGATGACGGGAGAAATTAAACAGCTCATTCCGGCTGTGCTAG
CGGCTTTTGGTGGCGAGCAAAGCCTTTAA

Upstream 100 bases:

>100_bases
CCCTAAAATCATTTACACTTGTACCCAAAATACCGGAAGATGCTGATTCAGCATCTTTAAGTCATTTAGGACTAACTCTC
TATCACTAAAGGTGCATTAC

Downstream 100 bases:

>100_bases
TAAAAAATAGACAGCATTCGGTTACAGGTAAATTGCCTCTCTGCCTCACCTGAAAAGAGGGTCTGTTGACCATTCGAGTA
CGAATTTTTTTCAATATAAA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAGKQILICLKKEEKMLPAGVIK
DQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFSRTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSL
PIVPIQLKNQADVIMTDWLTEGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS
FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGEQSL

Sequences:

>Translated_302_residues
MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAGKQILICLKKEEKMLPAGVIK
DQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFSRTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSL
PIVPIQLKNQADVIMTDWLTEGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS
FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGEQSL
>Mature_302_residues
MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAGKQILICLKKEEKMLPAGVIK
DQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFSRTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSL
PIVPIQLKNQADVIMTDWLTEGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS
FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGEQSL

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=299, Percent_Identity=52.1739130434783, Blast_Score=329, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_PSYIN (A1SWV9)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_943573.1
- ProteinModelPortal:   A1SWV9
- SMR:   A1SWV9
- STRING:   A1SWV9
- GeneID:   4624411
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2233
- eggNOG:   COG2974
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- PhylomeDB:   A1SWV9
- ProtClustDB:   PRK00321
- BioCyc:   PING357804:PING_2233-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34122; Mature: 34122

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAG
CCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEECCCCCCEEEEECC
KQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFS
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSLPIVPIQLKNQADVIMTDWLT
CCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCC
EGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS
CCCCCCCEEECCHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGEQ
HHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
SL
CC
>Mature Secondary Structure
MFFKNLQVYRFTRPLEQDIDTLERNLEEFKFKPCGSQDISKLGWVFPMGKSGSMYTHIAG
CCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEECCCCCCEEEEECC
KQILICLKKEEKMLPAGVIKDQLNERVEAIELEQGRALKKKEKDSLKEEIVMQLLPRAFS
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RTSQTFAWIDSESDMLYVDASSTRKAEELISLLRKTLGSLPIVPIQLKNQADVIMTDWLT
CCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCC
EGNIPANFALEDEAELCSALEGGGIIRCKQQDLLSDEIKNHLSADKFVTKLALCWADSIS
CCCCCCCEEECCHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIIGEEFALKRIKFADVLQEQNEDIDKDDFAARFDADFALMTGEIKQLIPAVLAAFGGEQ
HHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
SL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA