Click here to switch to the map view.

The map label for this gene is sapD [H]

Identifier: 119945855

GI number: 119945855

Start: 2670527

End: 2671537

Strand: Direct

Name: sapD [H]

Synonym: Ping_2195

Alternate gene names: 119945855

Gene position: 2670527-2671537 (Clockwise)

Preceding gene: 119945854

Following gene: 119945856

Centisome position: 58.57

GC content: 36.3

Gene sequence:

>1011_bases
ATGGCTTTATTAGATATACGCAACTTAAGCATCGATATCACAACAGCCCAGGGCACTACGCGGGTTGTTGATAAAGTATC
ATTACATATTGTTGATGGTTCAATACATGGTTTATTTGGAGAGTCGGGCTCAGGTAAGAGTTTAATTGCCAGCGCTATAT
TAGGATTACATAACCCAAATTGGAAAGTAACAGTCGATAGGATGTTTTTAGACTCAAAGGATTTAACTAAACTCTCTCCA
TCTGAGCGGCGTAAGATAATGGGCAAGGAAATCGCCATGATATTTCAACACCCCCGCTCTTACTTAGATCCAAGTAAAAA
AATATTTCCACAAATAAACGAAGTTTTACCTAATATCTCTTTAAAAAACCGACTATTTGATAAAATAAAGCACGATAGAA
AGAAAACATCAATTCAACAAATAAAAGAGTTATTTCACAAAGTTGGCATTCAGAATGATCAAGCTGTGTTACAAAGTTAT
CCTCACCAGCTATCAGAAGGTATTTGCCAAAAAATAATGATCGCAATGGCAATCGCTAATAATCCAAGGCTTATTATTGC
AGACGAACCAACCAATGCCATGGAAGCCGTTACCCAGGCTCAGATACTGCGTTTATTATATAAATTAAATCGATTGCACA
GTACAACTATTTTGTTATTAAGCAATAACTTTGGCTCTATCTGTAATTTATCTGATTTTATTACCTTGATTTACTGTGGT
CAGGCTGTAGAGTCAGGTAACTATAAAAAAATTATTGAAAGCCCAATGCATCCCTATACAGAAGCGATGATAAAAACCAC
ACTAAACTTTAATGAATCTATTATCCATAAAAGTCAATTATATACATTACAGGGAAATATTCCGTCATCAAACCAAATAC
CAATCGGTTGTCGTTTGGGACCACGCTGCCCGCGAGCGCAAAGAACCTGCGTAAAAAATCCTGATACGTTAAATTATAAA
GGGCATACGGTCCGTTGCCATTACCCAACCTTAGATGAAAAAACAGCATGA

Upstream 100 bases:

>100_bases
GGCTTATTATACTGCCAGGTCTGCTGATTTTTATTATCATCATGGTTGTTAATATATTTACGGAAGGTTTACGTCATGCA
ATTATACAAGGGGAAGATTG

Downstream 100 bases:

>100_bases
CAGCTCTTCTTTGCATAGATAATTTATATAAACAATATAAAGGCAGTAAGTTTTTTTTGTCTTCGGGCTTTCGAAATTCG
GTAGGACCAATAAATTTCAC

Product: ABC oligopeptide/dipeptide transporter ATP-binding protein

Products: ADP; phosphate; peptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MALLDIRNLSIDITTAQGTTRVVDKVSLHIVDGSIHGLFGESGSGKSLIASAILGLHNPNWKVTVDRMFLDSKDLTKLSP
SERRKIMGKEIAMIFQHPRSYLDPSKKIFPQINEVLPNISLKNRLFDKIKHDRKKTSIQQIKELFHKVGIQNDQAVLQSY
PHQLSEGICQKIMIAMAIANNPRLIIADEPTNAMEAVTQAQILRLLYKLNRLHSTTILLLSNNFGSICNLSDFITLIYCG
QAVESGNYKKIIESPMHPYTEAMIKTTLNFNESIIHKSQLYTLQGNIPSSNQIPIGCRLGPRCPRAQRTCVKNPDTLNYK
GHTVRCHYPTLDEKTA

Sequences:

>Translated_336_residues
MALLDIRNLSIDITTAQGTTRVVDKVSLHIVDGSIHGLFGESGSGKSLIASAILGLHNPNWKVTVDRMFLDSKDLTKLSP
SERRKIMGKEIAMIFQHPRSYLDPSKKIFPQINEVLPNISLKNRLFDKIKHDRKKTSIQQIKELFHKVGIQNDQAVLQSY
PHQLSEGICQKIMIAMAIANNPRLIIADEPTNAMEAVTQAQILRLLYKLNRLHSTTILLLSNNFGSICNLSDFITLIYCG
QAVESGNYKKIIESPMHPYTEAMIKTTLNFNESIIHKSQLYTLQGNIPSSNQIPIGCRLGPRCPRAQRTCVKNPDTLNYK
GHTVRCHYPTLDEKTA
>Mature_335_residues
ALLDIRNLSIDITTAQGTTRVVDKVSLHIVDGSIHGLFGESGSGKSLIASAILGLHNPNWKVTVDRMFLDSKDLTKLSPS
ERRKIMGKEIAMIFQHPRSYLDPSKKIFPQINEVLPNISLKNRLFDKIKHDRKKTSIQQIKELFHKVGIQNDQAVLQSYP
HQLSEGICQKIMIAMAIANNPRLIIADEPTNAMEAVTQAQILRLLYKLNRLHSTTILLLSNNFGSICNLSDFITLIYCGQ
AVESGNYKKIIESPMHPYTEAMIKTTLNFNESIIHKSQLYTLQGNIPSSNQIPIGCRLGPRCPRAQRTCVKNPDTLNYKG
HTVRCHYPTLDEKTA

Specific function: Involved in a peptide intake transport system that plays a role in the resistance to antimicrobial peptides [H]

COG id: COG4170

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1787548, Length=334, Percent_Identity=49.1017964071856, Blast_Score=343, Evalue=1e-95,
Organism=Escherichia coli, GI1789963, Length=334, Percent_Identity=36.8263473053892, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI48994883, Length=335, Percent_Identity=29.2537313432836, Blast_Score=180, Evalue=9e-47,
Organism=Escherichia coli, GI1787759, Length=335, Percent_Identity=32.2388059701493, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787500, Length=334, Percent_Identity=32.3353293413174, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI145693107, Length=271, Percent_Identity=32.4723247232472, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1788506, Length=265, Percent_Identity=35.8490566037736, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1789962, Length=316, Percent_Identity=28.7974683544304, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1787758, Length=306, Percent_Identity=29.7385620915033, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1789890, Length=267, Percent_Identity=29.5880149812734, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786398, Length=253, Percent_Identity=32.4110671936759, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787547, Length=277, Percent_Identity=27.4368231046931, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=27.8225806451613, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI48994997, Length=266, Percent_Identity=25.5639097744361, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789891, Length=230, Percent_Identity=29.1304347826087, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081791, Length=280, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787370, Length=269, Percent_Identity=26.3940520446097, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788450, Length=245, Percent_Identity=25.7142857142857, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081834, Length=207, Percent_Identity=28.0193236714976, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=25.8333333333333, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787712, Length=266, Percent_Identity=24.812030075188, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788225, Length=272, Percent_Identity=25.3676470588235, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786703, Length=222, Percent_Identity=26.1261261261261, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=24.8995983935743, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=28.0373831775701, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=26.027397260274, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=296, Percent_Identity=22.2972972972973, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787164, Length=220, Percent_Identity=24.5454545454545, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082268, Length=241, Percent_Identity=26.9709543568465, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=262, Percent_Identity=21.3740458015267, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786345, Length=249, Percent_Identity=23.6947791164659, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=25.1141552511416, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788644, Length=122, Percent_Identity=27.8688524590164, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 37768; Mature: 37637

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLDIRNLSIDITTAQGTTRVVDKVSLHIVDGSIHGLFGESGSGKSLIASAILGLHNPN
CCEEEEECCEEEEEECCCCHHHHHEEEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCC
WKVTVDRMFLDSKDLTKLSPSERRKIMGKEIAMIFQHPRSYLDPSKKIFPQINEVLPNIS
CEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCC
LKNRLFDKIKHDRKKTSIQQIKELFHKVGIQNDQAVLQSYPHQLSEGICQKIMIAMAIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCC
NPRLIIADEPTNAMEAVTQAQILRLLYKLNRLHSTTILLLSNNFGSICNLSDFITLIYCG
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHC
QAVESGNYKKIIESPMHPYTEAMIKTTLNFNESIIHKSQLYTLQGNIPSSNQIPIGCRLG
HHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCEEECCCC
PRCPRAQRTCVKNPDTLNYKGHTVRCHYPTLDEKTA
CCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
ALLDIRNLSIDITTAQGTTRVVDKVSLHIVDGSIHGLFGESGSGKSLIASAILGLHNPN
CEEEEECCEEEEEECCCCHHHHHEEEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCC
WKVTVDRMFLDSKDLTKLSPSERRKIMGKEIAMIFQHPRSYLDPSKKIFPQINEVLPNIS
CEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCC
LKNRLFDKIKHDRKKTSIQQIKELFHKVGIQNDQAVLQSYPHQLSEGICQKIMIAMAIAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCC
NPRLIIADEPTNAMEAVTQAQILRLLYKLNRLHSTTILLLSNNFGSICNLSDFITLIYCG
CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHC
QAVESGNYKKIIESPMHPYTEAMIKTTLNFNESIIHKSQLYTLQGNIPSSNQIPIGCRLG
HHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCEEECCCC
PRCPRAQRTCVKNPDTLNYKGHTVRCHYPTLDEKTA
CCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; peptides [Periplasm]; H2O [C]

Specific reaction: ATP + peptides [Periplasm] + H2O = ADP + phosphate + peptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]