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The map label for this gene is ydiU [C]

Identifier: 119945733

GI number: 119945733

Start: 2511277

End: 2512878

Strand: Direct

Name: ydiU [C]

Synonym: Ping_2062

Alternate gene names: 119945733

Gene position: 2511277-2512878 (Clockwise)

Preceding gene: 119945730

Following gene: 119945734

Centisome position: 55.08

GC content: 43.63

Gene sequence:

>1602_bases
ATGCCGTTTAACCATCTTAAATTTGATAACCGCCTTCGAAATAATCTACCTGCTGATAGCGAAACCGACAATTATTGCCG
CAGCGTAGAAAATGCAGCCTATTCATTGGTCTCCCCGGTAAAAGCAACAGCGCCAAAATTAGTTGCGGTTAGCAATTTAT
TGGCAGAACAATTAGGTTTTACCACTGAAGCCTTAAACAGCCCTGAATTTCCTCAAGCCATGACGGGCAATCTATTGCTC
GATGGGATGCAGCCCTATGCGCTTTGTTATGGTGGTCATCAGTTTGGTCAATGGGCCGGGCAATTAGGGGATGGACGGGC
AATCAACCTGGGCGAATTAGTCACGACAAATTTAGGTCACCAAACACTGCAGCTAAAGGGCGCCGGTCCAACCCCCTACT
CTCGCCGGGCTGACGGTATGGCCGTACTGCGCTCCTCTATTCGTGAGTTTTTGTGCTCCGAGGCGATGTTTCATTTAGGT
ATTTCAACGACACGCGCTTTGAGTTTATGCTTAACGGGCGATCAAGTTGTCCGGGATATGATGTATGACGGTAATGCAGC
ATTAGAGCCTACCGCAATAGTGTGCCGCGTATCTTCTTCTTTTTTACGTTTTGGTAGTTTTCAACTGCCCGCCTCCCGGG
GCGATGAACAACTTTTAATACAGCTTGTACAGCATTGTATTAAGTCTGATTATCCTCATTTAGCGCCCGCTTCCGGGGTA
TTTGATCAGCAAGTCTACCTTGCGTGGTTTAAAGAAATCTGCGAGCGTACCTGTGATACAGTAGTTAATTGGATGCGGGT
TGGTTTTGTACATGGGGTAATGAATACCGACAATATGTCCATTATGGGTGAAACCATCGATTATGGTCCCTATGGCTGGA
TTGACGATTTTGATCTTAATTGGACACCGAACACCACAGATGAAGGGCAAAAACGCTATCGTTTTGGCGGACAGGGAGAA
ATTAGTCAGTGGAACTTATTTCAGTTAGCCAATGCTATTTTTCCATTAATAGGAGAAGCTGAGCCATTACAAAAAATATT
AAATGAATATGGCACAGATTATCAGCGTAAATGGTGCGATATGATGGCGGAAAAATTAGGCTTTAAACACTATCGGGGTG
AAACTGATTTAGCGCTGTTTAAATCCTTAGAAAAATTATTGGGTGCAGTGGAAACAGATATGACCCTCTTTTACCGTTTA
CTTGCAAATATTCCCAATGATTTAGATACGCAAACAGCAACCCAATGGATGGCAAAATTAGGCCCATGCTATTACAGTCT
GCTCGATCTTAACGATCAGTATATTAAAGACTTGACGAAGTGGTTAGCGTCTTATCTTGAGCGAGTTAACCTTGATGGTT
TAAGTCAAGAACTGCGTGCAACAGCCATGAATAAAGTCAATCCTAAATATGTTATTCGTAATTACCTTGCGCAGCACGCT
ATCGAATTGGCTGAAAAGGGTGATTTCAGCGAAATAGCTACACTGCAGAAAATATTACAAAACCCCTATGATGATCAACC
TGAGCATAACAGTTATGCTCAGAAGCGTCCGGATTGGGCACGGGATAAAGCCGGTTGTTCGATGTTATCCTGCAGTTCAT
AA

Upstream 100 bases:

>100_bases
AAATTGACACAGTCGGGTATTGCCTAACTATTGGTTGCTCAATATACCTGACTGAATTAGTATGGTATAAAATTCTCTAA
TTTTCAGCAAGGAAAAACCC

Downstream 100 bases:

>100_bases
TAGCGATTTTATATCCTTTTTTGCCTTCACTTTATTCCACTAGATAAAATGAAGGCCGATTGCTATCGGGCAACAGCGCT
TTAAATATGATTAGAAAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 532

Protein sequence:

>533_residues
MPFNHLKFDNRLRNNLPADSETDNYCRSVENAAYSLVSPVKATAPKLVAVSNLLAEQLGFTTEALNSPEFPQAMTGNLLL
DGMQPYALCYGGHQFGQWAGQLGDGRAINLGELVTTNLGHQTLQLKGAGPTPYSRRADGMAVLRSSIREFLCSEAMFHLG
ISTTRALSLCLTGDQVVRDMMYDGNAALEPTAIVCRVSSSFLRFGSFQLPASRGDEQLLIQLVQHCIKSDYPHLAPASGV
FDQQVYLAWFKEICERTCDTVVNWMRVGFVHGVMNTDNMSIMGETIDYGPYGWIDDFDLNWTPNTTDEGQKRYRFGGQGE
ISQWNLFQLANAIFPLIGEAEPLQKILNEYGTDYQRKWCDMMAEKLGFKHYRGETDLALFKSLEKLLGAVETDMTLFYRL
LANIPNDLDTQTATQWMAKLGPCYYSLLDLNDQYIKDLTKWLASYLERVNLDGLSQELRATAMNKVNPKYVIRNYLAQHA
IELAEKGDFSEIATLQKILQNPYDDQPEHNSYAQKRPDWARDKAGCSMLSCSS

Sequences:

>Translated_533_residues
MPFNHLKFDNRLRNNLPADSETDNYCRSVENAAYSLVSPVKATAPKLVAVSNLLAEQLGFTTEALNSPEFPQAMTGNLLL
DGMQPYALCYGGHQFGQWAGQLGDGRAINLGELVTTNLGHQTLQLKGAGPTPYSRRADGMAVLRSSIREFLCSEAMFHLG
ISTTRALSLCLTGDQVVRDMMYDGNAALEPTAIVCRVSSSFLRFGSFQLPASRGDEQLLIQLVQHCIKSDYPHLAPASGV
FDQQVYLAWFKEICERTCDTVVNWMRVGFVHGVMNTDNMSIMGETIDYGPYGWIDDFDLNWTPNTTDEGQKRYRFGGQGE
ISQWNLFQLANAIFPLIGEAEPLQKILNEYGTDYQRKWCDMMAEKLGFKHYRGETDLALFKSLEKLLGAVETDMTLFYRL
LANIPNDLDTQTATQWMAKLGPCYYSLLDLNDQYIKDLTKWLASYLERVNLDGLSQELRATAMNKVNPKYVIRNYLAQHA
IELAEKGDFSEIATLQKILQNPYDDQPEHNSYAQKRPDWARDKAGCSMLSCSS
>Mature_532_residues
PFNHLKFDNRLRNNLPADSETDNYCRSVENAAYSLVSPVKATAPKLVAVSNLLAEQLGFTTEALNSPEFPQAMTGNLLLD
GMQPYALCYGGHQFGQWAGQLGDGRAINLGELVTTNLGHQTLQLKGAGPTPYSRRADGMAVLRSSIREFLCSEAMFHLGI
STTRALSLCLTGDQVVRDMMYDGNAALEPTAIVCRVSSSFLRFGSFQLPASRGDEQLLIQLVQHCIKSDYPHLAPASGVF
DQQVYLAWFKEICERTCDTVVNWMRVGFVHGVMNTDNMSIMGETIDYGPYGWIDDFDLNWTPNTTDEGQKRYRFGGQGEI
SQWNLFQLANAIFPLIGEAEPLQKILNEYGTDYQRKWCDMMAEKLGFKHYRGETDLALFKSLEKLLGAVETDMTLFYRLL
ANIPNDLDTQTATQWMAKLGPCYYSLLDLNDQYIKDLTKWLASYLERVNLDGLSQELRATAMNKVNPKYVIRNYLAQHAI
ELAEKGDFSEIATLQKILQNPYDDQPEHNSYAQKRPDWARDKAGCSMLSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=620, Percent_Identity=35.8064516129032, Blast_Score=344, Evalue=1e-94,
Organism=Escherichia coli, GI1787999, Length=530, Percent_Identity=37.1698113207547, Blast_Score=308, Evalue=6e-85,
Organism=Saccharomyces cerevisiae, GI6325034, Length=354, Percent_Identity=37.2881355932203, Blast_Score=204, Evalue=4e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 59946; Mature: 59814

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFNHLKFDNRLRNNLPADSETDNYCRSVENAAYSLVSPVKATAPKLVAVSNLLAEQLGF
CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCC
TTEALNSPEFPQAMTGNLLLDGMQPYALCYGGHQFGQWAGQLGDGRAINLGELVTTNLGH
CHHHCCCCCCCCHHCCCCCCCCCCCHHEEECCCHHHHHHHCCCCCCEEEHHHHHHHCCCC
QTLQLKGAGPTPYSRRADGMAVLRSSIREFLCSEAMFHLGISTTRALSLCLTGDQVVRDM
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHH
MYDGNAALEPTAIVCRVSSSFLRFGSFQLPASRGDEQLLIQLVQHCIKSDYPHLAPASGV
HHCCCCCCCCHHHEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
FDQQVYLAWFKEICERTCDTVVNWMRVGFVHGVMNTDNMSIMGETIDYGPYGWIDDFDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
WTPNTTDEGQKRYRFGGQGEISQWNLFQLANAIFPLIGEAEPLQKILNEYGTDYQRKWCD
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
MMAEKLGFKHYRGETDLALFKSLEKLLGAVETDMTLFYRLLANIPNDLDTQTATQWMAKL
HHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GPCYYSLLDLNDQYIKDLTKWLASYLERVNLDGLSQELRATAMNKVNPKYVIRNYLAQHA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IELAEKGDFSEIATLQKILQNPYDDQPEHNSYAQKRPDWARDKAGCSMLSCSS
HHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PFNHLKFDNRLRNNLPADSETDNYCRSVENAAYSLVSPVKATAPKLVAVSNLLAEQLGF
CCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHCC
TTEALNSPEFPQAMTGNLLLDGMQPYALCYGGHQFGQWAGQLGDGRAINLGELVTTNLGH
CHHHCCCCCCCCHHCCCCCCCCCCCHHEEECCCHHHHHHHCCCCCCEEEHHHHHHHCCCC
QTLQLKGAGPTPYSRRADGMAVLRSSIREFLCSEAMFHLGISTTRALSLCLTGDQVVRDM
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHH
MYDGNAALEPTAIVCRVSSSFLRFGSFQLPASRGDEQLLIQLVQHCIKSDYPHLAPASGV
HHCCCCCCCCHHHEEEHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
FDQQVYLAWFKEICERTCDTVVNWMRVGFVHGVMNTDNMSIMGETIDYGPYGWIDDFDLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
WTPNTTDEGQKRYRFGGQGEISQWNLFQLANAIFPLIGEAEPLQKILNEYGTDYQRKWCD
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHH
MMAEKLGFKHYRGETDLALFKSLEKLLGAVETDMTLFYRLLANIPNDLDTQTATQWMAKL
HHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
GPCYYSLLDLNDQYIKDLTKWLASYLERVNLDGLSQELRATAMNKVNPKYVIRNYLAQHA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IELAEKGDFSEIATLQKILQNPYDDQPEHNSYAQKRPDWARDKAGCSMLSCSS
HHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12835416 [H]