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The map label for this gene is araQ [H]

Identifier: 119945692

GI number: 119945692

Start: 2444339

End: 2445190

Strand: Reverse

Name: araQ [H]

Synonym: Ping_2009

Alternate gene names: 119945692

Gene position: 2445190-2444339 (Counterclockwise)

Preceding gene: 119945693

Following gene: 119945691

Centisome position: 53.63

GC content: 45.07

Gene sequence:

>852_bases
ATGTTTCCCAAACCAATAAAAAAATCAGGCCGCTTTGCCAATATAAGCTACCGCGTTGCCCTGCCTATTTCGATTGTACT
GTGGTTACTGCCGTTAATTGCCGTAATGATAACGTCTATTCGTTCGATAGAAGATATTAATAAAGGTAATTACTGGGGTT
GGCCGGAGTCGTTTAACTTTATTGAAAACTATACCGAGGTATTTGTATCCACTTCGATGGGACAGTATCTGCTTAACAGT
TTGCTTATTACCTTACCTGCGGTTGCCGGTGCCGTTGCACTGTCGACATTAGCCGGTTTTGCACTGGCGAAGTATAACTT
TAAAGGCAATGTTTGGATCTTTGCCGCCTTTATCGGAGGTAACTTTGTACCTTTTCAGATTCTGATGATTCCAGTGCGTG
ATTTGACCATCGACTTAGGGCTTTACGATACGCATTGGGCACTTATTTTTTTCCATATCGCGTTCCAAGCCGGTTTCTGT
ACGCTGTTTATGCGCAACTTTATTGTTGGTATTCCAGATGCATTGATTGAAGCTGCGCGGGTTGAAGGGGTCAGTGAATG
GAAAATATTCTGGCACATTGTATTACCCCTGGTGCGTCCCGCATTAGCGGCACTTGCCGTACTGGTATTTACCTTTATTT
GGAATGATTTCTTCTGGGCCTTAGTCTTAGTGCAGAGTGATGAAGTCCGTCCGGTTACCGCCGGGTTAAGTTCACTGCAG
GGACAGTGGTTATCATCATGGCAGTTTATGTCTGCCGGTGCTGTTGTTGCCGCGGTTCCGCCCGTGCTCCTGTTCTTTAC
CATGCAACGCCATTTTATAACCGGTTTAACCTTAGGTGCGACAAAAGGATAA

Upstream 100 bases:

>100_bases
ATCGCATGGGTTACGGTGCTGCGGTATCCGTCGTGCTGTTCTTAATCATGGATGTTTATATCGCATATTTCTTATGGCGT
ATGCTAAGGAGAGAAAAATA

Downstream 100 bases:

>100_bases
CCATGTAACGCCATTTTATAACAGATTTAACCTTAGGTGCGACAAAAGGATAACCATGTAACGCCATTTTATAACAGATT
TAACCTTAGGTGCGACAAAA

Product: ABC sugar transporter inner membrane binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MFPKPIKKSGRFANISYRVALPISIVLWLLPLIAVMITSIRSIEDINKGNYWGWPESFNFIENYTEVFVSTSMGQYLLNS
LLITLPAVAGAVALSTLAGFALAKYNFKGNVWIFAAFIGGNFVPFQILMIPVRDLTIDLGLYDTHWALIFFHIAFQAGFC
TLFMRNFIVGIPDALIEAARVEGVSEWKIFWHIVLPLVRPALAALAVLVFTFIWNDFFWALVLVQSDEVRPVTAGLSSLQ
GQWLSSWQFMSAGAVVAAVPPVLLFFTMQRHFITGLTLGATKG

Sequences:

>Translated_283_residues
MFPKPIKKSGRFANISYRVALPISIVLWLLPLIAVMITSIRSIEDINKGNYWGWPESFNFIENYTEVFVSTSMGQYLLNS
LLITLPAVAGAVALSTLAGFALAKYNFKGNVWIFAAFIGGNFVPFQILMIPVRDLTIDLGLYDTHWALIFFHIAFQAGFC
TLFMRNFIVGIPDALIEAARVEGVSEWKIFWHIVLPLVRPALAALAVLVFTFIWNDFFWALVLVQSDEVRPVTAGLSSLQ
GQWLSSWQFMSAGAVVAAVPPVLLFFTMQRHFITGLTLGATKG
>Mature_283_residues
MFPKPIKKSGRFANISYRVALPISIVLWLLPLIAVMITSIRSIEDINKGNYWGWPESFNFIENYTEVFVSTSMGQYLLNS
LLITLPAVAGAVALSTLAGFALAKYNFKGNVWIFAAFIGGNFVPFQILMIPVRDLTIDLGLYDTHWALIFFHIAFQAGFC
TLFMRNFIVGIPDALIEAARVEGVSEWKIFWHIVLPLVRPALAALAVLVFTFIWNDFFWALVLVQSDEVRPVTAGLSSLQ
GQWLSSWQFMSAGAVVAAVPPVLLFFTMQRHFITGLTLGATKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=205, Percent_Identity=28.780487804878, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=26.3736263736264, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790464, Length=214, Percent_Identity=26.6355140186916, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31548; Mature: 31548

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPKPIKKSGRFANISYRVALPISIVLWLLPLIAVMITSIRSIEDINKGNYWGWPESFNF
CCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
IENYTEVFVSTSMGQYLLNSLLITLPAVAGAVALSTLAGFALAKYNFKGNVWIFAAFIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCC
NFVPFQILMIPVRDLTIDLGLYDTHWALIFFHIAFQAGFCTLFMRNFIVGIPDALIEAAR
CCCEEEEEEEEHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VEGVSEWKIFWHIVLPLVRPALAALAVLVFTFIWNDFFWALVLVQSDEVRPVTAGLSSLQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHC
GQWLSSWQFMSAGAVVAAVPPVLLFFTMQRHFITGLTLGATKG
HHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCC
>Mature Secondary Structure
MFPKPIKKSGRFANISYRVALPISIVLWLLPLIAVMITSIRSIEDINKGNYWGWPESFNF
CCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
IENYTEVFVSTSMGQYLLNSLLITLPAVAGAVALSTLAGFALAKYNFKGNVWIFAAFIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCC
NFVPFQILMIPVRDLTIDLGLYDTHWALIFFHIAFQAGFCTLFMRNFIVGIPDALIEAAR
CCCEEEEEEEEHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
VEGVSEWKIFWHIVLPLVRPALAALAVLVFTFIWNDFFWALVLVQSDEVRPVTAGLSSLQ
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHC
GQWLSSWQFMSAGAVVAAVPPVLLFFTMQRHFITGLTLGATKG
HHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]