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The map label for this gene is yciR [C]

Identifier: 119945689

GI number: 119945689

Start: 2440028

End: 2442202

Strand: Reverse

Name: yciR [C]

Synonym: Ping_2006

Alternate gene names: 119945689

Gene position: 2442202-2440028 (Counterclockwise)

Preceding gene: 119945691

Following gene: 119945688

Centisome position: 53.56

GC content: 39.59

Gene sequence:

>2175_bases
TTGAGTAATAAAACGCCACAGATTAATAATCAACAAGATGATAATAACGCACGGTTAGAGCTTGTTATTAATGCTACCGG
TGTGGGTATATGGGATTGGCAGGTTCAAACCGGGGAGTTAACATTCAATAAACGCTGGGCAGAAATTATTGGTTATACCT
TTGATGAATTACAACCTATTCAATTTGACTCTTGGGCTAGTAACCTTCACCCCGATGATTTAGTAAAAGCTAAAAGTCTA
CTAGCACAACATTTTAACGGTGAAATCGATTTTTATGAGCTTGAAGCTCGAATGAAGCATAAATCGGGGCACTATGTGTG
GGTGCTGGCTTCGGGGAAATTAGTCGAAAGGGATGAGCAAGGTAAGCCAAAGCGCATGATCGGTACGCACTTAGATATTA
ATGAACGAAAAAATAACGAAGAGTTGATGATTGTAACCAGTCAGTTGCTGAATGAATCACAGCAAATAGGGCGCTTGGGA
GGATGGAAATTAGATTTAAAAACAGGTGATTTGTTTTGGACCGATGAAACTTACCGAATACATGAAACGTCTCCAGAGGA
GTTTAATCCTACGGTCGATGCTGGTATCGGTTATTTTTTGCCTGACTCGCAAAAGATTATTTCTAAGGCTTTGGATGAGG
CAATCAATAATGGAATAGGTTATGACCTTGAGTTACAAACCTATACCACTAAAGGTAGAAAAATAGATGTAAGAACGACA
TGTATTGTTACTCAGGAAGACGGAGTAGCTGTTCGCCTAACGGGGATTTTTCAAGATATCAGTGAGCAGAAAGCCAATCA
GAGAAAATTAGAAAAAAGTAATCTTGATTTAGCGAATGCGAACTCGGCACTAAAACTATCAGCACATTATGACCCGTTAA
CAGGATTACCTAACCGGATTTTATTAGCCGACAGAATTCAACAGGCCGTGGCAAAAAGCTTGCGTAATGACAAATATGTG
GCAGTCGCGTTTATTGATTTAGATGGATTTAAAGCAGTTAATGACAGTCATGGTCACACTATTGGTGACGAATTATTGAA
AAAAGTTGCGAAACGATTAAAGCATGTGTTGCGAGAGGGGGATACCTTATCGCGTTTTGGTGGCGATGAATTTGTGGCGG
TCATTGATAATCTCTCTGACCCTCGCGAAAGTGATTTAATCGTGTTGCGTATGCTTGAGTCGGTTTCTTCTACGCTGGTG
GTTGAAAAAAAATTATTAAAAATTTCTGCCAGTATTGGGGTTACATTCTATCCGCTAGACAGTGCTGGCCCCGAGCAGTT
GTTAAGGCATGCGGATCAGGCTATGTATATGGCTAAGCAGCAAGGAAAAAATCGCAGTTATGTTTTTGATATAGAACAAG
ACGTGGCCATAAAACACCATAATGAAGCGTTAAAAAGAATAGCTCAAGCGTTAAAAAATAATGAGTTTGCACTTTATTAT
CAACCTAAAACCGACCTCAGAAGCAATCGAGTTGTTGGGGTCGAAGCCCTCATTCGTTGGAATCATCCTGACAGAGGAGT
ACTTGCTCCAGCTATGTTTTTACCTGCGGTTGAGCATGATATATTAGATATCGAAATAGGAAAATGGGTCATCAAAACGG
CTTTGCAACAATCTCAAAACTGGCTATCTTCGGGGACTGATATTCCAATCAGTGTGAATATCAGTCCCCTGCATTTACAG
CATGCAGAATTTGTTAGTGAATTGAAGAGGATGCTTGATCAGTATCCTAATATCAACGCTGGCAGTCTTGAATTTGAAAT
TTTAGAAAGCAGCGCACTGAAAGATATTGAGTTAGTTTCAAAAGTGATGAAAGAGTGTAACCAGCTTGGGGTGCGTTTTT
CAATTGATGATTTTGGTACAGGTTATTCTTCATTAACCTATTTAAAGCGTTTGCCCGCCGAAACTTTAAAAATAGATCAA
TCATTCGTGAGAGACATGTTAATAGATACGGACGATAAAGCAATTATCCAAGGAATCATTGAATTAGCGAAAGTATTTAA
TCTTAAAGTGATTGCTGAAGGGGTCGAAACACCTCAGCATGGAGAGTTATTACTCTCTTTGGGCTGTTACTTTGTACAGG
GGTATGGCATTGCGAAACCGATGCATGAAAACGATGTCTTAACTTGGTTAGTTAAGTGGGAAAAAACTCCCTGCTTAGTT
GATGGACGTGTTTAA

Upstream 100 bases:

>100_bases
TTTTGAGCTAAATCAGCCATTTTTTTGTCTGCCCTTAGAGATCAAGCCCTATTCAATATTAACAAAGAACATGAATATTA
ATTCATATTAGGAAAAGCAC

Downstream 100 bases:

>100_bases
CTAAATATGTCGGCAATCGTTCCTGCTGTCATTGATGATCTAAGCTTCAAGGGTAGCTATGCAAGTGGCCTAAGGGGCAG
GTCTGAATAGCACTGCATTA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 723

Protein sequence:

>724_residues
MSNKTPQINNQQDDNNARLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPIQFDSWASNLHPDDLVKAKSL
LAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQGKPKRMIGTHLDINERKNNEELMIVTSQLLNESQQIGRLG
GWKLDLKTGDLFWTDETYRIHETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINNGIGYDLELQTYTTKGRKIDVRTT
CIVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNLDLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKYV
AVAFIDLDGFKAVNDSHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESVSSTLV
VEKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQDVAIKHHNEALKRIAQALKNNEFALYY
QPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFLPAVEHDILDIEIGKWVIKTALQQSQNWLSSGTDIPISVNISPLHLQ
HAEFVSELKRMLDQYPNINAGSLEFEILESSALKDIELVSKVMKECNQLGVRFSIDDFGTGYSSLTYLKRLPAETLKIDQ
SFVRDMLIDTDDKAIIQGIIELAKVFNLKVIAEGVETPQHGELLLSLGCYFVQGYGIAKPMHENDVLTWLVKWEKTPCLV
DGRV

Sequences:

>Translated_724_residues
MSNKTPQINNQQDDNNARLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPIQFDSWASNLHPDDLVKAKSL
LAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQGKPKRMIGTHLDINERKNNEELMIVTSQLLNESQQIGRLG
GWKLDLKTGDLFWTDETYRIHETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINNGIGYDLELQTYTTKGRKIDVRTT
CIVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNLDLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKYV
AVAFIDLDGFKAVNDSHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESVSSTLV
VEKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQDVAIKHHNEALKRIAQALKNNEFALYY
QPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFLPAVEHDILDIEIGKWVIKTALQQSQNWLSSGTDIPISVNISPLHLQ
HAEFVSELKRMLDQYPNINAGSLEFEILESSALKDIELVSKVMKECNQLGVRFSIDDFGTGYSSLTYLKRLPAETLKIDQ
SFVRDMLIDTDDKAIIQGIIELAKVFNLKVIAEGVETPQHGELLLSLGCYFVQGYGIAKPMHENDVLTWLVKWEKTPCLV
DGRV
>Mature_723_residues
SNKTPQINNQQDDNNARLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPIQFDSWASNLHPDDLVKAKSLL
AQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQGKPKRMIGTHLDINERKNNEELMIVTSQLLNESQQIGRLGG
WKLDLKTGDLFWTDETYRIHETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINNGIGYDLELQTYTTKGRKIDVRTTC
IVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNLDLANANSALKLSAHYDPLTGLPNRILLADRIQQAVAKSLRNDKYVA
VAFIDLDGFKAVNDSHGHTIGDELLKKVAKRLKHVLREGDTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESVSSTLVV
EKKLLKISASIGVTFYPLDSAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQDVAIKHHNEALKRIAQALKNNEFALYYQ
PKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFLPAVEHDILDIEIGKWVIKTALQQSQNWLSSGTDIPISVNISPLHLQH
AEFVSELKRMLDQYPNINAGSLEFEILESSALKDIELVSKVMKECNQLGVRFSIDDFGTGYSSLTYLKRLPAETLKIDQS
FVRDMLIDTDDKAIIQGIIELAKVFNLKVIAEGVETPQHGELLLSLGCYFVQGYGIAKPMHENDVLTWLVKWEKTPCLVD
GRV

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=508, Percent_Identity=31.8897637795276, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI87081921, Length=485, Percent_Identity=30.1030927835052, Blast_Score=203, Evalue=4e-53,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=30.1149425287356, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1788849, Length=442, Percent_Identity=27.1493212669683, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081980, Length=261, Percent_Identity=31.0344827586207, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=31.7073170731707, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI1788502, Length=251, Percent_Identity=31.8725099601594, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI87081743, Length=263, Percent_Identity=30.7984790874525, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1786507, Length=258, Percent_Identity=29.8449612403101, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI1788381, Length=713, Percent_Identity=24.1234221598878, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=404, Percent_Identity=26.2376237623762, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=26.4150943396226, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081845, Length=264, Percent_Identity=30.3030303030303, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=36.3636363636364, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=28.8659793814433, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081881, Length=192, Percent_Identity=32.2916666666667, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=32.2033898305085, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=32.3699421965318, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=32.4022346368715, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787262, Length=189, Percent_Identity=29.6296296296296, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI1789650, Length=442, Percent_Identity=21.4932126696833, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=32.183908045977, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=27.0718232044199, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=29.8136645962733, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81704; Mature: 81573

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKTPQINNQQDDNNARLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPI
CCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCEEECHHHHHHHCCCHHHCCCC
QFDSWASNLHPDDLVKAKSLLAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQ
EECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCEEEEEECCCEEECCCC
GKPKRMIGTHLDINERKNNEELMIVTSQLLNESQQIGRLGGWKLDLKTGDLFWTDETYRI
CCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHCCCCCEEEEEECCCEEECCCEEEE
HETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINNGIGYDLELQTYTTKGRKIDVRTT
ECCCCHHCCCCHHCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEE
CIVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNLDLANANSALKLSAHYDPLTGLPNRI
EEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCHH
LLADRIQQAVAKSLRNDKYVAVAFIDLDGFKAVNDSHGHTIGDELLKKVAKRLKHVLREG
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
DTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESVSSTLVVEKKLLKISASIGVTFYPLD
CCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECC
SAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQDVAIKHHNEALKRIAQALKNNEFALYY
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFLPAVEHDILDIEIGKWVIKTALQQSQN
CCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
WLSSGTDIPISVNISPLHLQHAEFVSELKRMLDQYPNINAGSLEFEILESSALKDIELVS
HHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH
KVMKECNQLGVRFSIDDFGTGYSSLTYLKRLPAETLKIDQSFVRDMLIDTDDKAIIQGII
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ELAKVFNLKVIAEGVETPQHGELLLSLGCYFVQGYGIAKPMHENDVLTWLVKWEKTPCLV
HHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE
DGRV
CCCC
>Mature Secondary Structure 
SNKTPQINNQQDDNNARLELVINATGVGIWDWQVQTGELTFNKRWAEIIGYTFDELQPI
CCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEECCEEECHHHHHHHCCCHHHCCCC
QFDSWASNLHPDDLVKAKSLLAQHFNGEIDFYELEARMKHKSGHYVWVLASGKLVERDEQ
EECCHHCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCEEEEEECCCEEECCCC
GKPKRMIGTHLDINERKNNEELMIVTSQLLNESQQIGRLGGWKLDLKTGDLFWTDETYRI
CCCHHHCCCCCCCCCCCCCCEEEEEEHHHHCCHHHHCCCCCEEEEEECCCEEECCCEEEE
HETSPEEFNPTVDAGIGYFLPDSQKIISKALDEAINNGIGYDLELQTYTTKGRKIDVRTT
ECCCCHHCCCCHHCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEEEEE
CIVTQEDGVAVRLTGIFQDISEQKANQRKLEKSNLDLANANSALKLSAHYDPLTGLPNRI
EEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEECCCCCCCCCCHH
LLADRIQQAVAKSLRNDKYVAVAFIDLDGFKAVNDSHGHTIGDELLKKVAKRLKHVLREG
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
DTLSRFGGDEFVAVIDNLSDPRESDLIVLRMLESVSSTLVVEKKLLKISASIGVTFYPLD
CCHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECC
SAGPEQLLRHADQAMYMAKQQGKNRSYVFDIEQDVAIKHHNEALKRIAQALKNNEFALYY
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
QPKTDLRSNRVVGVEALIRWNHPDRGVLAPAMFLPAVEHDILDIEIGKWVIKTALQQSQN
CCCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHH
WLSSGTDIPISVNISPLHLQHAEFVSELKRMLDQYPNINAGSLEFEILESSALKDIELVS
HHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHH
KVMKECNQLGVRFSIDDFGTGYSSLTYLKRLPAETLKIDQSFVRDMLIDTDDKAIIQGII
HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ELAKVFNLKVIAEGVETPQHGELLLSLGCYFVQGYGIAKPMHENDVLTWLVKWEKTPCLV
HHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEE
DGRV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]